kustomize: use FS from `fluxcd/pkg`

This switches to a secure FS implementation in most places, except for
where we can not make changes at this moment because it would break
behavior.

Not handled in this commit:

- Allowing the root for `manifestgen` packages to be configured.
- Allowing the user to define a working root while building locally.
- Defaulting to the secure FS implementation in
  `kustomization.MakeDefaultOptions`. Problem here is that constructing
  the secure FS could result in an error, which we can not surface
  without signature changes to the constructor func.

Signed-off-by: Hidde Beydals <hello@hidde.co>

go.mod

@@ -13,7 +13,7 @@ require (
 	github.com/fluxcd/kustomize-controller/api v0.24.4
 	github.com/fluxcd/notification-controller/api v0.23.4
 	github.com/fluxcd/pkg/apis/meta v0.12.2
-	github.com/fluxcd/pkg/kustomize v0.2.0
+	github.com/fluxcd/pkg/kustomize v0.4.0
 	github.com/fluxcd/pkg/runtime v0.14.1
 	github.com/fluxcd/pkg/ssa v0.15.2
 	github.com/fluxcd/pkg/ssh v0.3.2

go.sum

@@ -391,8 +391,8 @@ github.com/fluxcd/pkg/apis/kustomize v0.3.3 h1:bPN29SdVzWl0yhgivuf/83IAe2R6vUuDV
 github.com/fluxcd/pkg/apis/kustomize v0.3.3/go.mod h1:5HTOFZfQFVMMqR2rvuxpbZhpb+sQpcTT6RCQZOhjFzA=
 github.com/fluxcd/pkg/apis/meta v0.12.2 h1:AiKAZxLyPtV150y63WC+mL1Qm4x5qWQmW6r4mLy1i8c=
 github.com/fluxcd/pkg/apis/meta v0.12.2/go.mod h1:Z26X5uTU5LxAyWETGueRQY7TvdPaGfKU7Wye9bdUlho=
-github.com/fluxcd/pkg/kustomize v0.2.0 h1:twiGAFJctt2tyH8vHxL1uqb6BlU3B9ZqG8uSlluuioM=
-github.com/fluxcd/pkg/kustomize v0.2.0/go.mod h1:Qczvl7vNY9NJBpyaFrldsxfGjj6uaMcMmKGsSJ6hcxc=
+github.com/fluxcd/pkg/kustomize v0.4.0 h1:ct1YGrO/o++NVecAyeOxd3/YzGNvRdslaE6pmWxBt0M=
+github.com/fluxcd/pkg/kustomize v0.4.0/go.mod h1:ZlTFhk6Cxtmf1T7tpYuTACmMfqDdsPcXUGRAq3t9fH8=
 github.com/fluxcd/pkg/runtime v0.14.1 h1:ZbS3RzR+f+wu1e6Y7GoCxY9PFZkOgX6/gL7Enr75CY0=
 github.com/fluxcd/pkg/runtime v0.14.1/go.mod h1:eS4378ydLlWPt2fFjcrAAnJegGJNj3Q/iqYZqjBeWlM=
 github.com/fluxcd/pkg/ssa v0.15.2 h1:hLEIh7Ymlt6ihfQHIEx7DjAa+FCndBpHW6wyELToVsI=

internal/bootstrap/bootstrap_plain_git.go

@@ -31,11 +31,11 @@ import (
 	"k8s.io/cli-runtime/pkg/genericclioptions"
 	"sigs.k8s.io/cli-utils/pkg/object"
 	"sigs.k8s.io/controller-runtime/pkg/client"
-	"sigs.k8s.io/kustomize/api/filesys"
 	"sigs.k8s.io/kustomize/api/konfig"
 	"sigs.k8s.io/yaml"
 
 	kustomizev1 "github.com/fluxcd/kustomize-controller/api/v1beta2"
+	"github.com/fluxcd/pkg/kustomize/filesys"
 	runclient "github.com/fluxcd/pkg/runtime/client"
 
 	"github.com/fluxcd/flux2/internal/bootstrap/git"
@@ -105,7 +105,7 @@ func NewPlainGitProvider(git git.Git, kube client.Client, opts ...GitOption) (*P
 	return b, nil
 }
 
-func (b *PlainGitBootstrapper) ReconcileComponents(ctx context.Context, manifestsBase string, options install.Options, secretOpts sourcesecret.Options) error {
+func (b *PlainGitBootstrapper) ReconcileComponents(ctx context.Context, manifestsBase string, options install.Options, _ sourcesecret.Options) error {
 	// Clone if not already
 	if _, err := b.git.Status(); err != nil {
 		if err != git.ErrNoGitRepository {
@@ -263,13 +263,21 @@ func (b *PlainGitBootstrapper) ReconcileSyncConfig(ctx context.Context, options
 	if err = b.git.Write(manifests.Path, strings.NewReader(manifests.Content)); err != nil {
 		return fmt.Errorf("failed to write manifest %q: %w", manifests.Path, err)
 	}
+
+	// Create secure Kustomize FS
+	fs, err := filesys.MakeFsOnDiskSecureBuild(b.git.Path())
+	if err != nil {
+		return fmt.Errorf("failed to initialize Kustomize file system: %w", err)
+	}
+
+	// Generate Kustomization
 	kusManifests, err := kustomization.Generate(kustomization.Options{
-		FileSystem: filesys.MakeFsOnDisk(),
+		FileSystem: fs,
 		BaseDir:    b.git.Path(),
 		TargetPath: filepath.Dir(manifests.Path),
 	})
 	if err != nil {
-		return fmt.Errorf("kustomization.yaml generation failed: %w", err)
+		return fmt.Errorf("%s generation failed: %w", konfig.DefaultKustomizationFileName(), err)
 	}
 	if err = b.git.Write(kusManifests.Path, strings.NewReader(kusManifests.Content)); err != nil {
 		return fmt.Errorf("failed to write manifest %q: %w", kusManifests.Path, err)

internal/build/build.go

@@ -37,11 +37,11 @@ import (
 	"sigs.k8s.io/controller-runtime/pkg/client"
 	"sigs.k8s.io/kustomize/api/resmap"
 	"sigs.k8s.io/kustomize/api/resource"
-	"sigs.k8s.io/kustomize/kyaml/filesys"
 	"sigs.k8s.io/kustomize/kyaml/yaml"
 
 	kustomizev1 "github.com/fluxcd/kustomize-controller/api/v1beta2"
 	"github.com/fluxcd/pkg/kustomize"
+	"github.com/fluxcd/pkg/kustomize/filesys"
 	runclient "github.com/fluxcd/pkg/runtime/client"
 
 	"github.com/fluxcd/flux2/internal/utils"
@@ -275,7 +275,11 @@ func (b *Builder) generate(kustomization kustomizev1.Kustomization, dirPath stri
 }
 
 func (b *Builder) do(ctx context.Context, kustomization kustomizev1.Kustomization, dirPath string) (resmap.ResMap, error) {
-	fs := filesys.MakeFsOnDisk()
+	// TODO(hidde): provide option to enforce FS boundaries of local build
+	fs, err := filesys.MakeFsOnDiskSecureBuild("/")
+	if err != nil {
+		return nil, fmt.Errorf("kustomization build failed: %w", err)
+	}
 
 	// acuire the lock
 	b.mu.Lock()

pkg/manifestgen/install/manifests.go

@@ -26,8 +26,8 @@ import (
 	"path/filepath"
 	"strings"
 
+	"github.com/fluxcd/pkg/kustomize/filesys"
 	"github.com/fluxcd/pkg/untar"
-	"sigs.k8s.io/kustomize/api/filesys"
 
 	"github.com/fluxcd/flux2/pkg/manifestgen/kustomization"
 )
@@ -126,8 +126,12 @@ func build(base, output string) error {
 		return err
 	}
 
-	fs := filesys.MakeFsOnDisk()
-	if err := fs.WriteFile(output, resources); err != nil {
+	outputBase := filepath.Dir(strings.TrimSuffix(output, string(filepath.Separator)))
+	fs, err := filesys.MakeFsOnDiskSecure(outputBase)
+	if err != nil {
+		return err
+	}
+	if err = fs.WriteFile(output, resources); err != nil {
 		return err
 	}
 

pkg/manifestgen/kustomization/kustomization.go

@@ -20,20 +20,23 @@ import (
 	"fmt"
 	"os"
 	"path/filepath"
+	"strings"
 	"sync"
 
-	"sigs.k8s.io/kustomize/api/filesys"
 	"sigs.k8s.io/kustomize/api/konfig"
 	"sigs.k8s.io/kustomize/api/krusty"
 	"sigs.k8s.io/kustomize/api/provider"
 	kustypes "sigs.k8s.io/kustomize/api/types"
 	"sigs.k8s.io/yaml"
 
+	"github.com/fluxcd/pkg/kustomize/filesys"
+
 	"github.com/fluxcd/flux2/pkg/manifestgen"
 )
 
-// Generate scans the given directory for Kubernetes manifests and creates a kustomization.yaml
-// including all discovered manifests as resources.
+// Generate scans the given directory for Kubernetes manifests and creates a
+// konfig.DefaultKustomizationFileName file, including all discovered manifests
+// as resources.
 func Generate(options Options) (*manifestgen.Manifest, error) {
 	kfile := filepath.Join(options.TargetPath, konfig.DefaultKustomizationFileName())
 	abskfile := filepath.Join(options.BaseDir, kfile)
@@ -50,7 +53,7 @@ func Generate(options Options) (*manifestgen.Manifest, error) {
 				return nil
 			}
 			if info.IsDir() {
-				// If a sub-directory contains an existing Kustomization file add the
+				// If a sub-directory contains an existing Kustomization file, add the
 				// directory as a resource and do not decent into it.
 				for _, kfilename := range konfig.RecognizedKustomizationFileNames() {
 					if options.FileSystem.Exists(filepath.Join(path, kfilename)) {
@@ -88,7 +91,9 @@ func Generate(options Options) (*manifestgen.Manifest, error) {
 		if err != nil {
 			return nil, err
 		}
-		f.Close()
+		if err = f.Close(); err != nil {
+			return nil, err
+		}
 
 		kus := kustypes.Kustomization{
 			TypeMeta: kustypes.TypeMeta{
@@ -128,20 +133,32 @@ func Generate(options Options) (*manifestgen.Manifest, error) {
 	}, nil
 }
 
+// kustomizeBuildMutex is a workaround for a concurrent map read and map write bug.
+// TODO(stefan): https://github.com/kubernetes-sigs/kustomize/issues/3659
 var kustomizeBuildMutex sync.Mutex
 
-// Build takes a Kustomize overlays and returns the resulting manifests as multi-doc YAML.
+// Build takes the path to a directory with a konfig.RecognizedKustomizationFileNames,
+// builds it, and returns the resulting manifests as multi-doc YAML.
 func Build(base string) ([]byte, error) {
-	// TODO(stefan): temporary workaround for concurrent map read and map write bug
-	// https://github.com/kubernetes-sigs/kustomize/issues/3659
 	kustomizeBuildMutex.Lock()
 	defer kustomizeBuildMutex.Unlock()
 
-	kfile := filepath.Join(base, konfig.DefaultKustomizationFileName())
+	// TODO(hidde): make this configurable to a specific root (relative to base)
+	parent := filepath.Dir(strings.TrimSuffix(base, string(filepath.Separator)))
+	fs, err := filesys.MakeFsOnDiskSecureBuild(parent)
+	if err != nil {
+		return nil, err
+	}
 
-	fs := filesys.MakeFsOnDisk()
-	if !fs.Exists(kfile) {
-		return nil, fmt.Errorf("%s not found", kfile)
+	var kfile string
+	for _, f := range konfig.RecognizedKustomizationFileNames() {
+		if kf := filepath.Join(base, f); fs.Exists(kf) {
+			kfile = kf
+			break
+		}
+	}
+	if kfile == "" {
+		return nil, fmt.Errorf("%s not found", konfig.DefaultKustomizationFileName())
 	}
 
 	// TODO(hidde): work around for a bug in kustomize causing it to

pkg/manifestgen/kustomization/options.go

@@ -25,6 +25,8 @@ type Options struct {
 }
 
 func MakeDefaultOptions() Options {
+	// TODO(hidde): switch MakeFsOnDisk to MakeFsOnDiskSecureBuild when we
+	//  break API.
 	return Options{
 		FileSystem: filesys.MakeFsOnDisk(),
 		BaseDir:    "",