diff --git a/manifests/bases/source-controller/kustomization.yaml b/manifests/bases/source-controller/kustomization.yaml
index 1913029c..b8e4b0f0 100644
--- a/manifests/bases/source-controller/kustomization.yaml
+++ b/manifests/bases/source-controller/kustomization.yaml
@@ -1,5 +1,5 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- github.com/fluxcd/source-controller/config//crd?ref=v0.0.1-alpha.5
-- github.com/fluxcd/source-controller/config//manager?ref=v0.0.1-alpha.5
+- github.com/fluxcd/source-controller/config//crd?ref=v0.0.1-alpha.6
+- github.com/fluxcd/source-controller/config//manager?ref=v0.0.1-alpha.6