Merge pull request #2135 from fluxcd/revert-json-schemas

Pinned to commit before https://github.com/fluxcd/pkg/pull/189 due to
introduction faulty behavior.

Signed-off-by: Hidde Beydals <hello@hidde.co>

.github/ISSUE_TEMPLATE/bug_report.yaml

@@ -48,19 +48,18 @@ body:
     required: true
   attributes:
     label: Flux version
-    description: Run `flux --version` to check. If not applicable, write `N/A`.
-    placeholder: e.g. 0.16.1
+    description: Run `flux version --client`. If not applicable, write `N/A`.
+    placeholder: e.g. v0.20.1
 - type: textarea
   validations:
     required: true
   attributes:
     label: Flux check
-    description: Run `flux check` to check. If not applicable, write `N/A`.
+    description: Run `flux check`. If not applicable, write `N/A`.
     placeholder: |
       For example:
       ► checking prerequisites
-      ✔ kubectl 1.21.0 >=1.18.0-0
-      ✔ Kubernetes 1.21.1 >=1.16.0-0
+      ✔ Kubernetes 1.21.1 >=1.19.0-0
       ► checking controllers
       ✔ all checks passed
 - type: input

.github/workflows/bootstrap.yaml

@@ -64,6 +64,22 @@ jobs:
           --team=team-z
         env:
           GITHUB_TOKEN: ${{ secrets.GITPROVIDER_BOT_TOKEN }}
+      - name: bootstrap customize
+        run: |
+          make setup-bootstrap-patch
+          /tmp/flux bootstrap github --manifests ./manifests/install/ \
+          --owner=fluxcd-testing \
+          --repository=${{ steps.vars.outputs.test_repo_name }} \
+          --branch=main \
+          --path=test-cluster \
+          --team=team-z
+          if [ $(kubectl get deployments.apps source-controller -o jsonpath='{.spec.template.spec.securityContext.runAsUser}') != "10000" ]; then
+          echo "Bootstrap not customized as controller is not running as user 10000" && exit 1
+          fi
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITPROVIDER_BOT_TOKEN }}
+          GITHUB_REPO_NAME: ${{ steps.vars.outputs.test_repo_name }}
+          GITHUB_ORG_NAME: fluxcd-testing
       - name: libgit2
         run: |
           /tmp/flux create source git test-libgit2 \
@@ -75,16 +91,24 @@ jobs:
         run: |
           /tmp/flux uninstall -s --keep-namespace
           kubectl delete ns flux-system --timeout=10m --wait=true
-      - name: bootstrap reinstall
+      - name: test image automation
         run: |
+          make setup-image-automation
           /tmp/flux bootstrap github --manifests ./manifests/install/ \
           --owner=fluxcd-testing \
           --repository=${{ steps.vars.outputs.test_repo_name }} \
           --branch=main \
           --path=test-cluster \
-          --team=team-z
+          --read-write-key
+          /tmp/flux reconcile image repository podinfo
+          /tmp/flux reconcile image update flux-system
+          /tmp/flux get images all
+          /tmp/flux get images policy podinfo | grep "5.2.1"
+          /tmp/flux get image update flux-system | grep commit
         env:
           GITHUB_TOKEN: ${{ secrets.GITPROVIDER_BOT_TOKEN }}
+          GITHUB_REPO_NAME: ${{ steps.vars.outputs.test_repo_name }}
+          GITHUB_ORG_NAME: fluxcd-testing
       - name: delete repository
         run: |
           curl \

.github/workflows/e2e.yaml

@@ -80,6 +80,13 @@ jobs:
             --tag-semver=">=3.2.3" \
             --export | kubectl apply -f -
           /tmp/flux delete source git podinfo-export --silent
+      - name: flux create source git libgit2 semver
+        run: |
+          /tmp/flux create source git podinfo-libgit2 \
+            --url https://github.com/stefanprodan/podinfo  \
+            --tag-semver=">=3.2.3" \
+            --git-implementation=libgit2
+          /tmp/flux delete source git podinfo-libgit2 --silent
       - name: flux get sources git
         run: |
           /tmp/flux get sources git
@@ -184,7 +191,14 @@ jobs:
           /tmp/flux create kustomization flux-system \
           --source=flux-system \
           --path=./clusters/staging
+          kubectl -n flux-system wait kustomization/infrastructure --for=condition=ready --timeout=5m
           kubectl -n flux-system wait kustomization/apps --for=condition=ready --timeout=5m
+          kubectl -n nginx wait helmrelease/nginx --for=condition=ready --timeout=5m
+          kubectl -n redis wait helmrelease/redis --for=condition=ready --timeout=5m
+          kubectl -n podinfo wait helmrelease/podinfo --for=condition=ready --timeout=5m
+      - name: flux tree
+        run: |
+          /tmp/flux tree kustomization flux-system | grep Service/podinfo
       - name: flux check
         run: |
           /tmp/flux check

.github/workflows/release.yaml

@@ -56,8 +56,10 @@ jobs:
       - name: Build CRDs
         run: |
           kustomize build manifests/crds > all-crds.yaml
+      # Pinned to commit before https://github.com/fluxcd/pkg/pull/189 due to
+      # introduction faulty behavior.
       - name: Generate OpenAPI JSON schemas from CRDs
-        uses: fluxcd/pkg//actions/crdjsonschema@main
+        uses: fluxcd/pkg//actions/crdjsonschema@49e26aa2ee9e734c3233c560253fd9542afe18ae
         with:
           crd: all-crds.yaml
           output: schemas

CONTRIBUTING.md

@@ -30,7 +30,7 @@ you can sign your commit automatically with `git commit -s`.
 
 For realtime communications we use Slack: To join the conversation, simply
 join the [CNCF](https://slack.cncf.io/) Slack workspace and use the
-[#flux-dev](https://cloud-native.slack.com/messages/flux-dev/) channel.
+[#flux-contributors](https://cloud-native.slack.com/messages/flux-contributors/) channel.
 
 To discuss ideas and specifications we use [Github
 Discussions](https://github.com/fluxcd/flux2/discussions).
@@ -63,27 +63,42 @@ To get started with developing controllers, you might want to review
 walks you through writing a short and concise controller that watches out
 for source changes.
 
-### How to run the test suite
+## How to run the test suite
 
 Prerequisites:
 
 * go >= 1.16
-* kubectl >= 1.18
-* kustomize >= 3.1
+* kubectl >= 1.19
+* kustomize >= 4.0
 
-You can run the unit tests by simply doing
+Install the [controller-runtime/envtest](https://github.com/kubernetes-sigs/controller-runtime/tree/master/tools/setup-envtest) binaries with:
+
+```bash
+make install-envtest
+```
+
+Then you can run the unit tests with:
 
 ```bash
 make test
 ```
 
-The e2e test suite uses [kind](https://kind.sigs.k8s.io/) for running kubernetes cluster inside docker containers. You can run the e2e tests by simply doing
+After [installing Kubernetes kind](https://kind.sigs.k8s.io/docs/user/quick-start#installation) on your machine,
+create a cluster for testing with:
 
 ```bash
 make setup-kind
-make e2e
+```
 
-# When done
+Then you can run the end-to-end tests with:
+
+```bash
+make e2e
+```
+
+Teardown the e2e environment with:
+
+```bash
 make cleanup-kind
 ```
 

Dockerfile

@@ -1,4 +1,4 @@
-FROM alpine:3.13 as builder
+FROM alpine:3.14 as builder
 
 RUN apk add --no-cache ca-certificates curl
 
@@ -9,7 +9,7 @@ RUN curl -sL https://storage.googleapis.com/kubernetes-release/release/v${KUBECT
     -o /usr/local/bin/kubectl && chmod +x /usr/local/bin/kubectl && \
     kubectl version --client=true
 
-FROM alpine:3.13 as flux-cli
+FROM alpine:3.14 as flux-cli
 
 # Create minimal nsswitch.conf file to prioritize the usage of /etc/hosts over DNS queries.
 # https://github.com/gliderlabs/docker-alpine/issues/367#issuecomment-354316460

MAINTAINERS

@@ -14,5 +14,7 @@ In alphabetical order:
 
 Aurel Canciu, Sortlist <aurel@sortlist.com> (github: @relu, slack: relu)
 Hidde Beydals, Weaveworks <hidde@weave.works> (github: @hiddeco, slack: hidde)
+Max Jonas Werner, D2iQ <mwerner@d2iq.com> (github: @makkes, slack: max)
 Philip Laine, Xenit <philip.laine@xenit.se> (github: @phillebaba, slack: phillebaba)
 Stefan Prodan, Weaveworks <stefan@weave.works> (github: @stefanprodan, slack: stefanprodan)
+Sunny, Weaveworks <sunny@weave.works> (github: @darkowlzz, slack: darkowlzz)

Makefile

@@ -2,7 +2,7 @@ VERSION?=$(shell grep 'VERSION' cmd/flux/main.go | awk '{ print $$4 }' | head -n
 EMBEDDED_MANIFESTS_TARGET=cmd/flux/.manifests.done
 TEST_KUBECONFIG?=/tmp/flux-e2e-test-kubeconfig
 ENVTEST_BIN_VERSION?=latest
-KUBEBUILDER_ASSETS?="$(shell $(SETUP_ENVTEST) use -i $(ENVTEST_BIN_VERSION) -p path)"
+KUBEBUILDER_ASSETS?=$(shell $(SETUP_ENVTEST) use -i $(ENVTEST_BIN_VERSION) -p path)
 
 # Get the currently used golang install path (in GOPATH/bin, unless GOBIN is set)
 ifeq (,$(shell go env GOBIN))
@@ -33,13 +33,13 @@ cleanup-kind:
 	kind delete cluster --name=flux-e2e-test
 	rm $(TEST_KUBECONFIG)
 
-test: $(EMBEDDED_MANIFESTS_TARGET) tidy fmt vet setup-envtest
-	KUBEBUILDER_ASSETS=$(KUBEBUILDER_ASSETS) go test ./... -coverprofile cover.out --tags=unit
+test: $(EMBEDDED_MANIFESTS_TARGET) tidy fmt vet install-envtest
+	KUBEBUILDER_ASSETS="$(KUBEBUILDER_ASSETS)" go test ./... -coverprofile cover.out --tags=unit
 
 e2e: $(EMBEDDED_MANIFESTS_TARGET) tidy fmt vet
 	TEST_KUBECONFIG=$(TEST_KUBECONFIG) go test ./cmd/flux/... -coverprofile e2e.cover.out --tags=e2e -v -failfast
 
-test-with-kind: setup-envtest
+test-with-kind: install-envtest
 	make setup-kind
 	make e2e
 	make cleanup-kind
@@ -51,12 +51,22 @@ $(EMBEDDED_MANIFESTS_TARGET): $(call rwildcard,manifests/,*.yaml *.json)
 build: $(EMBEDDED_MANIFESTS_TARGET)
 	CGO_ENABLED=0 go build -ldflags="-s -w -X main.VERSION=$(VERSION)" -o ./bin/flux ./cmd/flux
 
+.PHONY: install
 install:
-	go install cmd/flux
+	CGO_ENABLED=0 go install ./cmd/flux
 
 install-dev:
 	CGO_ENABLED=0 go build -o /usr/local/bin ./cmd/flux
 
+install-envtest:  setup-envtest
+	 $(SETUP_ENVTEST) use $(ENVTEST_BIN_VERSION)
+
+setup-bootstrap-patch:
+	go run ./tests/bootstrap/main.go
+
+setup-image-automation:
+	cd tests/image-automation && go run main.go
+
 # Find or download setup-envtest
 setup-envtest:
 ifeq (, $(shell which setup-envtest))

cmd/flux/bootstrap.go

@@ -140,7 +140,7 @@ func NewBootstrapFlags() bootstrapFlags {
 	return bootstrapFlags{
 		logLevel:           flags.LogLevel(rootArgs.defaults.LogLevel),
 		requiredComponents: []string{"source-controller", "kustomize-controller"},
-		keyAlgorithm:       flags.PublicKeyAlgorithm(sourcesecret.RSAPrivateKeyAlgorithm),
+		keyAlgorithm:       flags.PublicKeyAlgorithm(sourcesecret.ECDSAPrivateKeyAlgorithm),
 		keyRSABits:         2048,
 		keyECDSACurve:      flags.ECDSACurve{Curve: elliptic.P384()},
 	}

cmd/flux/bootstrap_bitbucket_server.go

@@ -0,0 +1,279 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+package main
+
+import (
+	"context"
+	"fmt"
+	"os"
+	"time"
+
+	"github.com/go-git/go-git/v5/plumbing/transport/http"
+	"github.com/spf13/cobra"
+
+	"github.com/fluxcd/flux2/internal/bootstrap"
+	"github.com/fluxcd/flux2/internal/bootstrap/git/gogit"
+	"github.com/fluxcd/flux2/internal/bootstrap/provider"
+	"github.com/fluxcd/flux2/internal/flags"
+	"github.com/fluxcd/flux2/internal/utils"
+	"github.com/fluxcd/flux2/pkg/manifestgen/install"
+	"github.com/fluxcd/flux2/pkg/manifestgen/sourcesecret"
+	"github.com/fluxcd/flux2/pkg/manifestgen/sync"
+)
+
+var bootstrapBServerCmd = &cobra.Command{
+	Use:   "bitbucket-server",
+	Short: "Bootstrap toolkit components in a Bitbucket Server repository",
+	Long: `The bootstrap bitbucket-server command creates the Bitbucket Server repository if it doesn't exists and
+commits the toolkit components manifests to the master branch.
+Then it configures the target cluster to synchronize with the repository.
+If the toolkit components are present on the cluster,
+the bootstrap command will perform an upgrade if needed.`,
+	Example: `  # Create a Bitbucket Server API token and export it as an env var
+  export BITBUCKET_TOKEN=<my-token>
+
+  # Run bootstrap for a private repository using HTTPS token authentication
+  flux bootstrap bitbucket-server --owner=<project> --username=<user> --repository=<repository name> --hostname=<domain> --token-auth
+
+  # Run bootstrap for a private repository using SSH authentication
+  flux bootstrap bitbucket-server --owner=<project> --username=<user> --repository=<repository name> --hostname=<domain>
+
+  # Run bootstrap for a repository path
+  flux bootstrap bitbucket-server --owner=<project> --username=<user> --repository=<repository name> --path=dev-cluster --hostname=<domain>
+
+  # Run bootstrap for a public repository on a personal account
+  flux bootstrap bitbucket-server --owner=<user> --repository=<repository name> --private=false --personal --hostname=<domain> --token-auth
+
+  # Run bootstrap for a an existing repository with a branch named main
+  flux bootstrap bitbucket-server --owner=<project> --username=<user> --repository=<repository name> --branch=main --hostname=<domain> --token-auth`,
+	RunE: bootstrapBServerCmdRun,
+}
+
+const (
+	bServerDefaultPermission = "push"
+	bServerTokenEnvVar       = "BITBUCKET_TOKEN"
+)
+
+type bServerFlags struct {
+	owner        string
+	repository   string
+	interval     time.Duration
+	personal     bool
+	username     string
+	private      bool
+	hostname     string
+	path         flags.SafeRelativePath
+	teams        []string
+	readWriteKey bool
+	reconcile    bool
+}
+
+var bServerArgs bServerFlags
+
+func init() {
+	bootstrapBServerCmd.Flags().StringVar(&bServerArgs.owner, "owner", "", "Bitbucket Server user or project name")
+	bootstrapBServerCmd.Flags().StringVar(&bServerArgs.repository, "repository", "", "Bitbucket Server repository name")
+	bootstrapBServerCmd.Flags().StringSliceVar(&bServerArgs.teams, "group", []string{}, "Bitbucket Server groups to be given write access (also accepts comma-separated values)")
+	bootstrapBServerCmd.Flags().BoolVar(&bServerArgs.personal, "personal", false, "if true, the owner is assumed to be a Bitbucket Server user; otherwise a group")
+	bootstrapBServerCmd.Flags().StringVarP(&bServerArgs.username, "username", "u", "git", "authentication username")
+	bootstrapBServerCmd.Flags().BoolVar(&bServerArgs.private, "private", true, "if true, the repository is setup or configured as private")
+	bootstrapBServerCmd.Flags().DurationVar(&bServerArgs.interval, "interval", time.Minute, "sync interval")
+	bootstrapBServerCmd.Flags().StringVar(&bServerArgs.hostname, "hostname", "", "Bitbucket Server hostname")
+	bootstrapBServerCmd.Flags().Var(&bServerArgs.path, "path", "path relative to the repository root, when specified the cluster sync will be scoped to this path")
+	bootstrapBServerCmd.Flags().BoolVar(&bServerArgs.readWriteKey, "read-write-key", false, "if true, the deploy key is configured with read/write permissions")
+	bootstrapBServerCmd.Flags().BoolVar(&bServerArgs.reconcile, "reconcile", false, "if true, the configured options are also reconciled if the repository already exists")
+
+	bootstrapCmd.AddCommand(bootstrapBServerCmd)
+}
+
+func bootstrapBServerCmdRun(cmd *cobra.Command, args []string) error {
+	bitbucketToken := os.Getenv(bServerTokenEnvVar)
+	if bitbucketToken == "" {
+		var err error
+		bitbucketToken, err = readPasswordFromStdin("Please enter your Bitbucket personal access token (PAT): ")
+		if err != nil {
+			return fmt.Errorf("could not read token: %w", err)
+		}
+	}
+
+	if bServerArgs.hostname == "" {
+		return fmt.Errorf("invalid hostname %q", bServerArgs.hostname)
+	}
+
+	if err := bootstrapValidate(); err != nil {
+		return err
+	}
+
+	ctx, cancel := context.WithTimeout(context.Background(), rootArgs.timeout)
+	defer cancel()
+
+	kubeClient, err := utils.KubeClient(rootArgs.kubeconfig, rootArgs.kubecontext)
+	if err != nil {
+		return err
+	}
+
+	// Manifest base
+	if ver, err := getVersion(bootstrapArgs.version); err == nil {
+		bootstrapArgs.version = ver
+	}
+	manifestsBase, err := buildEmbeddedManifestBase()
+	if err != nil {
+		return err
+	}
+	defer os.RemoveAll(manifestsBase)
+
+	user := bServerArgs.username
+	if bServerArgs.personal {
+		user = bServerArgs.owner
+	}
+
+	var caBundle []byte
+	if bootstrapArgs.caFile != "" {
+		var err error
+		caBundle, err = os.ReadFile(bootstrapArgs.caFile)
+		if err != nil {
+			return fmt.Errorf("unable to read TLS CA file: %w", err)
+		}
+	}
+
+	// Build Bitbucket Server provider
+	providerCfg := provider.Config{
+		Provider: provider.GitProviderStash,
+		Hostname: bServerArgs.hostname,
+		Username: user,
+		Token:    bitbucketToken,
+		CaBundle: caBundle,
+	}
+
+	providerClient, err := provider.BuildGitProvider(providerCfg)
+	if err != nil {
+		return err
+	}
+
+	// Lazy go-git repository
+	tmpDir, err := os.MkdirTemp("", "flux-bootstrap-")
+	if err != nil {
+		return fmt.Errorf("failed to create temporary working dir: %w", err)
+	}
+	defer os.RemoveAll(tmpDir)
+	gitClient := gogit.New(tmpDir, &http.BasicAuth{
+		Username: user,
+		Password: bitbucketToken,
+	})
+
+	// Install manifest config
+	installOptions := install.Options{
+		BaseURL:                rootArgs.defaults.BaseURL,
+		Version:                bootstrapArgs.version,
+		Namespace:              rootArgs.namespace,
+		Components:             bootstrapComponents(),
+		Registry:               bootstrapArgs.registry,
+		ImagePullSecret:        bootstrapArgs.imagePullSecret,
+		WatchAllNamespaces:     bootstrapArgs.watchAllNamespaces,
+		NetworkPolicy:          bootstrapArgs.networkPolicy,
+		LogLevel:               bootstrapArgs.logLevel.String(),
+		NotificationController: rootArgs.defaults.NotificationController,
+		ManifestFile:           rootArgs.defaults.ManifestFile,
+		Timeout:                rootArgs.timeout,
+		TargetPath:             bServerArgs.path.ToSlash(),
+		ClusterDomain:          bootstrapArgs.clusterDomain,
+		TolerationKeys:         bootstrapArgs.tolerationKeys,
+	}
+	if customBaseURL := bootstrapArgs.manifestsPath; customBaseURL != "" {
+		installOptions.BaseURL = customBaseURL
+	}
+
+	// Source generation and secret config
+	secretOpts := sourcesecret.Options{
+		Name:         bootstrapArgs.secretName,
+		Namespace:    rootArgs.namespace,
+		TargetPath:   bServerArgs.path.String(),
+		ManifestFile: sourcesecret.MakeDefaultOptions().ManifestFile,
+	}
+	if bootstrapArgs.tokenAuth {
+		if bServerArgs.personal {
+			secretOpts.Username = bServerArgs.owner
+		} else {
+			secretOpts.Username = bServerArgs.username
+		}
+		secretOpts.Password = bitbucketToken
+
+		if bootstrapArgs.caFile != "" {
+			secretOpts.CAFilePath = bootstrapArgs.caFile
+		}
+	} else {
+		secretOpts.PrivateKeyAlgorithm = sourcesecret.PrivateKeyAlgorithm(bootstrapArgs.keyAlgorithm)
+		secretOpts.RSAKeyBits = int(bootstrapArgs.keyRSABits)
+		secretOpts.ECDSACurve = bootstrapArgs.keyECDSACurve.Curve
+		secretOpts.SSHHostname = bServerArgs.hostname
+
+		if bootstrapArgs.privateKeyFile != "" {
+			secretOpts.PrivateKeyPath = bootstrapArgs.privateKeyFile
+		}
+		if bootstrapArgs.sshHostname != "" {
+			secretOpts.SSHHostname = bootstrapArgs.sshHostname
+		}
+	}
+
+	// Sync manifest config
+	syncOpts := sync.Options{
+		Interval:          bServerArgs.interval,
+		Name:              rootArgs.namespace,
+		Namespace:         rootArgs.namespace,
+		Branch:            bootstrapArgs.branch,
+		Secret:            bootstrapArgs.secretName,
+		TargetPath:        bServerArgs.path.ToSlash(),
+		ManifestFile:      sync.MakeDefaultOptions().ManifestFile,
+		GitImplementation: sourceGitArgs.gitImplementation.String(),
+		RecurseSubmodules: bootstrapArgs.recurseSubmodules,
+	}
+
+	// Bootstrap config
+	bootstrapOpts := []bootstrap.GitProviderOption{
+		bootstrap.WithProviderRepository(bServerArgs.owner, bServerArgs.repository, bServerArgs.personal),
+		bootstrap.WithBranch(bootstrapArgs.branch),
+		bootstrap.WithBootstrapTransportType("https"),
+		bootstrap.WithAuthor(bootstrapArgs.authorName, bootstrapArgs.authorEmail),
+		bootstrap.WithCommitMessageAppendix(bootstrapArgs.commitMessageAppendix),
+		bootstrap.WithProviderTeamPermissions(mapTeamSlice(bServerArgs.teams, bServerDefaultPermission)),
+		bootstrap.WithReadWriteKeyPermissions(bServerArgs.readWriteKey),
+		bootstrap.WithKubeconfig(rootArgs.kubeconfig, rootArgs.kubecontext),
+		bootstrap.WithLogger(logger),
+		bootstrap.WithCABundle(caBundle),
+	}
+	if bootstrapArgs.sshHostname != "" {
+		bootstrapOpts = append(bootstrapOpts, bootstrap.WithSSHHostname(bootstrapArgs.sshHostname))
+	}
+	if bootstrapArgs.tokenAuth {
+		bootstrapOpts = append(bootstrapOpts, bootstrap.WithSyncTransportType("https"))
+	}
+	if !bServerArgs.private {
+		bootstrapOpts = append(bootstrapOpts, bootstrap.WithProviderRepositoryConfig("", "", "public"))
+	}
+	if bServerArgs.reconcile {
+		bootstrapOpts = append(bootstrapOpts, bootstrap.WithReconcile())
+	}
+
+	// Setup bootstrapper with constructed configs
+	b, err := bootstrap.NewGitProviderBootstrapper(gitClient, providerClient, kubeClient, bootstrapOpts...)
+	if err != nil {
+		return err
+	}
+
+	// Run
+	return bootstrap.Run(ctx, b, manifestsBase, installOptions, secretOpts, syncOpts, rootArgs.pollInterval, rootArgs.timeout)
+}

cmd/flux/bootstrap_github.go

@@ -111,7 +111,11 @@ func init() {
 func bootstrapGitHubCmdRun(cmd *cobra.Command, args []string) error {
 	ghToken := os.Getenv(ghTokenEnvVar)
 	if ghToken == "" {
-		return fmt.Errorf("%s environment variable not found", ghTokenEnvVar)
+		var err error
+		ghToken, err = readPasswordFromStdin("Please enter your GitHub personal access token (PAT): ")
+		if err != nil {
+			return fmt.Errorf("could not read token: %w", err)
+		}
 	}
 
 	if err := bootstrapValidate(); err != nil {
@@ -136,11 +140,20 @@ func bootstrapGitHubCmdRun(cmd *cobra.Command, args []string) error {
 	}
 	defer os.RemoveAll(manifestsBase)
 
+	var caBundle []byte
+	if bootstrapArgs.caFile != "" {
+		var err error
+		caBundle, err = os.ReadFile(bootstrapArgs.caFile)
+		if err != nil {
+			return fmt.Errorf("unable to read TLS CA file: %w", err)
+		}
+	}
 	// Build GitHub provider
 	providerCfg := provider.Config{
 		Provider: provider.GitProviderGitHub,
 		Hostname: githubArgs.hostname,
 		Token:    ghToken,
+		CaBundle: caBundle,
 	}
 	providerClient, err := provider.BuildGitProvider(providerCfg)
 	if err != nil {
@@ -229,6 +242,7 @@ func bootstrapGitHubCmdRun(cmd *cobra.Command, args []string) error {
 		bootstrap.WithReadWriteKeyPermissions(githubArgs.readWriteKey),
 		bootstrap.WithKubeconfig(rootArgs.kubeconfig, rootArgs.kubecontext),
 		bootstrap.WithLogger(logger),
+		bootstrap.WithCABundle(caBundle),
 	}
 	if bootstrapArgs.sshHostname != "" {
 		bootstrapOpts = append(bootstrapOpts, bootstrap.WithSSHHostname(bootstrapArgs.sshHostname))

cmd/flux/bootstrap_gitlab.go

@@ -108,7 +108,11 @@ func init() {
 func bootstrapGitLabCmdRun(cmd *cobra.Command, args []string) error {
 	glToken := os.Getenv(glTokenEnvVar)
 	if glToken == "" {
-		return fmt.Errorf("%s environment variable not found", glTokenEnvVar)
+		var err error
+		glToken, err = readPasswordFromStdin("Please enter your GitLab personal access token (PAT): ")
+		if err != nil {
+			return fmt.Errorf("could not read token: %w", err)
+		}
 	}
 
 	if projectNameIsValid, err := regexp.MatchString(gitlabProjectRegex, gitlabArgs.repository); err != nil || !projectNameIsValid {
@@ -140,11 +144,21 @@ func bootstrapGitLabCmdRun(cmd *cobra.Command, args []string) error {
 	}
 	defer os.RemoveAll(manifestsBase)
 
+	var caBundle []byte
+	if bootstrapArgs.caFile != "" {
+		var err error
+		caBundle, err = os.ReadFile(bootstrapArgs.caFile)
+		if err != nil {
+			return fmt.Errorf("unable to read TLS CA file: %w", err)
+		}
+	}
+
 	// Build GitLab provider
 	providerCfg := provider.Config{
 		Provider: provider.GitProviderGitLab,
 		Hostname: gitlabArgs.hostname,
 		Token:    glToken,
+		CaBundle: caBundle,
 	}
 	// Workaround for: https://github.com/fluxcd/go-git-providers/issues/55
 	if hostname := providerCfg.Hostname; hostname != glDefaultDomain &&
@@ -242,6 +256,7 @@ func bootstrapGitLabCmdRun(cmd *cobra.Command, args []string) error {
 		bootstrap.WithReadWriteKeyPermissions(gitlabArgs.readWriteKey),
 		bootstrap.WithKubeconfig(rootArgs.kubeconfig, rootArgs.kubecontext),
 		bootstrap.WithLogger(logger),
+		bootstrap.WithCABundle(caBundle),
 	}
 	if bootstrapArgs.sshHostname != "" {
 		bootstrapOpts = append(bootstrapOpts, bootstrap.WithSSHHostname(bootstrapArgs.sshHostname))

cmd/flux/check.go

@@ -30,6 +30,7 @@ import (
 	"github.com/fluxcd/pkg/version"
 
 	"github.com/fluxcd/flux2/internal/utils"
+	"github.com/fluxcd/flux2/pkg/manifestgen"
 	"github.com/fluxcd/flux2/pkg/manifestgen/install"
 	"github.com/fluxcd/flux2/pkg/status"
 )
@@ -51,6 +52,7 @@ type checkFlags struct {
 	pre             bool
 	components      []string
 	extraComponents []string
+	pollInterval    time.Duration
 }
 
 var kubernetesConstraints = []string{
@@ -69,6 +71,8 @@ func init() {
 		"list of components, accepts comma-separated values")
 	checkCmd.Flags().StringSliceVar(&checkArgs.extraComponents, "components-extra", nil,
 		"list of components in addition to those supplied or defaulted, accepts comma-separated values")
+	checkCmd.Flags().DurationVar(&checkArgs.pollInterval, "poll-interval", 5*time.Second,
+		"how often the health checker should poll the cluster for the latest state of the resources.")
 	rootCmd.AddCommand(checkCmd)
 }
 
@@ -177,7 +181,7 @@ func componentsCheck() bool {
 		return false
 	}
 
-	statusChecker, err := status.NewStatusChecker(kubeConfig, time.Second, rootArgs.timeout, logger)
+	statusChecker, err := status.NewStatusChecker(kubeConfig, checkArgs.pollInterval, rootArgs.timeout, logger)
 	if err != nil {
 		return false
 	}
@@ -188,7 +192,7 @@ func componentsCheck() bool {
 	}
 
 	ok := true
-	selector := client.MatchingLabels{"app.kubernetes.io/instance": rootArgs.namespace}
+	selector := client.MatchingLabels{manifestgen.PartOfLabelKey: manifestgen.PartOfLabelValue}
 	var list v1.DeploymentList
 	if err := kubeClient.List(ctx, &list, client.InNamespace(rootArgs.namespace), selector); err == nil {
 		for _, d := range list.Items {

cmd/flux/check_test.go

@@ -1,5 +1,21 @@
 // +build e2e
 
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import (

cmd/flux/create_kustomization.go

@@ -89,6 +89,7 @@ type kustomizationFlags struct {
 	decryptionProvider flags.DecryptionProvider
 	decryptionSecret   string
 	targetNamespace    string
+	wait               bool
 }
 
 var kustomizationArgs = NewKustomizationFlags()
@@ -97,6 +98,7 @@ func init() {
 	createKsCmd.Flags().Var(&kustomizationArgs.source, "source", kustomizationArgs.source.Description())
 	createKsCmd.Flags().Var(&kustomizationArgs.path, "path", "path to the directory containing a kustomization.yaml file")
 	createKsCmd.Flags().BoolVar(&kustomizationArgs.prune, "prune", false, "enable garbage collection")
+	createKsCmd.Flags().BoolVar(&kustomizationArgs.wait, "wait", false, "enable health checking of all the applied resources")
 	createKsCmd.Flags().StringSliceVar(&kustomizationArgs.healthCheck, "health-check", nil, "workload to be included in the health assessment, in the format '<kind>/<name>.<namespace>'")
 	createKsCmd.Flags().DurationVar(&kustomizationArgs.healthTimeout, "health-check-timeout", 2*time.Minute, "timeout of health checking operations")
 	createKsCmd.Flags().StringVar(&kustomizationArgs.validation, "validation", "", "validate the manifests before applying them on the cluster, can be 'client' or 'server'")
@@ -161,7 +163,7 @@ func createKsCmdRun(cmd *cobra.Command, args []string) error {
 		},
 	}
 
-	if len(kustomizationArgs.healthCheck) > 0 {
+	if len(kustomizationArgs.healthCheck) > 0 && !kustomizationArgs.wait {
 		healthChecks := make([]meta.NamespacedObjectKindReference, 0)
 		for _, w := range kustomizationArgs.healthCheck {
 			kindObj := strings.Split(w, "/")
@@ -202,6 +204,13 @@ func createKsCmdRun(cmd *cobra.Command, args []string) error {
 		}
 	}
 
+	if kustomizationArgs.wait {
+		kustomization.Spec.Wait = true
+		kustomization.Spec.Timeout = &metav1.Duration{
+			Duration: kustomizationArgs.healthTimeout,
+		}
+	}
+
 	if kustomizationArgs.saName != "" {
 		kustomization.Spec.ServiceAccountName = kustomizationArgs.saName
 	}

cmd/flux/create_secret_git.go

@@ -105,7 +105,7 @@ func init() {
 
 func NewSecretGitFlags() secretGitFlags {
 	return secretGitFlags{
-		keyAlgorithm: flags.PublicKeyAlgorithm(sourcesecret.RSAPrivateKeyAlgorithm),
+		keyAlgorithm: flags.PublicKeyAlgorithm(sourcesecret.ECDSAPrivateKeyAlgorithm),
 		rsaBits:      2048,
 		ecdsaCurve:   flags.ECDSACurve{Curve: elliptic.P384()},
 	}
@@ -161,7 +161,7 @@ func createSecretGitCmdRun(cmd *cobra.Command, args []string) error {
 	}
 
 	if createArgs.export {
-		fmt.Println(secret.Content)
+		rootCmd.Println(secret.Content)
 		return nil
 	}
 

cmd/flux/create_secret_git_test.go

@@ -0,0 +1,44 @@
+package main
+
+import (
+	"testing"
+)
+
+func TestCreateGitSecret(t *testing.T) {
+	tests := []struct {
+		name   string
+		args   string
+		assert assertFunc
+	}{
+		{
+			name:   "no args",
+			args:   "create secret git",
+			assert: assertError("secret name is required"),
+		},
+		{
+			name:   "basic secret",
+			args:   "create secret git podinfo-auth --url=https://github.com/stefanprodan/podinfo --username=my-username --password=my-password --namespace=my-namespace --export",
+			assert: assertGoldenFile("./testdata/create_secret/git/secret-git-basic.yaml"),
+		},
+		{
+			name:   "ssh key",
+			args:   "create secret git podinfo-auth --url=ssh://git@github.com/stefanprodan/podinfo --private-key-file=./testdata/create_secret/git/ecdsa.private --namespace=my-namespace --export",
+			assert: assertGoldenFile("testdata/create_secret/git/git-ssh-secret.yaml"),
+		},
+		{
+			name:   "ssh key with password",
+			args:   "create secret git podinfo-auth --url=ssh://git@github.com/stefanprodan/podinfo --private-key-file=./testdata/create_secret/git/ecdsa-password.private --password=password --namespace=my-namespace --export",
+			assert: assertGoldenFile("testdata/create_secret/git/git-ssh-secret-password.yaml"),
+		},
+	}
+
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			cmd := cmdTestCase{
+				args:   tt.args,
+				assert: tt.assert,
+			}
+			cmd.runTestCmd(t)
+		})
+	}
+}

cmd/flux/create_secret_helm.go

@@ -94,7 +94,7 @@ func createSecretHelmCmdRun(cmd *cobra.Command, args []string) error {
 	}
 
 	if createArgs.export {
-		fmt.Println(secret.Content)
+		rootCmd.Println(secret.Content)
 		return nil
 	}
 

cmd/flux/create_secret_helm_test.go

@@ -0,0 +1,31 @@
+package main
+
+import (
+	"testing"
+)
+
+func TestCreateHelmSecret(t *testing.T) {
+	tests := []struct {
+		name   string
+		args   string
+		assert assertFunc
+	}{
+		{
+			args:   "create secret helm",
+			assert: assertError("secret name is required"),
+		},
+		{
+			args:   "create secret helm helm-secret --username=my-username --password=my-password --namespace=my-namespace --export",
+			assert: assertGoldenFile("testdata/create_secret/helm/secret-helm.yaml"),
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			cmd := cmdTestCase{
+				args:   tt.args,
+				assert: tt.assert,
+			}
+			cmd.runTestCmd(t)
+		})
+	}
+}

cmd/flux/create_secret_tls.go

@@ -91,7 +91,7 @@ func createSecretTLSCmdRun(cmd *cobra.Command, args []string) error {
 	}
 
 	if createArgs.export {
-		fmt.Println(secret.Content)
+		rootCmd.Print(secret.Content)
 		return nil
 	}
 

cmd/flux/create_secret_tls_test.go

@@ -0,0 +1,31 @@
+package main
+
+import (
+	"testing"
+)
+
+func TestCreateTlsSecretNoArgs(t *testing.T) {
+	tests := []struct {
+		name   string
+		args   string
+		assert assertFunc
+	}{
+		{
+			args:   "create secret tls",
+			assert: assertError("secret name is required"),
+		},
+		{
+			args:   "create secret tls certs --namespace=my-namespace --cert-file=./testdata/create_secret/tls/test-cert.pem --key-file=./testdata/create_secret/tls/test-key.pem --export",
+			assert: assertGoldenFile("testdata/create_secret/tls/secret-tls.yaml"),
+		},
+	}
+	for _, tt := range tests {
+		t.Run(tt.name, func(t *testing.T) {
+			cmd := cmdTestCase{
+				args:   tt.args,
+				assert: tt.assert,
+			}
+			cmd.runTestCmd(t)
+		})
+	}
+}

cmd/flux/create_source.go

@@ -17,6 +17,8 @@ limitations under the License.
 package main
 
 import (
+	"time"
+
 	"github.com/spf13/cobra"
 )
 
@@ -26,6 +28,14 @@ var createSourceCmd = &cobra.Command{
 	Long:  "The create source sub-commands generate sources.",
 }
 
+type createSourceFlags struct {
+	fetchTimeout time.Duration
+}
+
+var createSourceArgs createSourceFlags
+
 func init() {
+	createSourceCmd.PersistentFlags().DurationVar(&createSourceArgs.fetchTimeout, "fetch-timeout", createSourceArgs.fetchTimeout,
+		"set a timeout for fetch operations performed by source-controller (e.g. 'git clone' or 'helm repo update')")
 	createCmd.AddCommand(createSourceCmd)
 }

cmd/flux/create_source_bucket.go

@@ -134,6 +134,11 @@ func createSourceBucketCmdRun(cmd *cobra.Command, args []string) error {
 			},
 		},
 	}
+
+	if createSourceArgs.fetchTimeout > 0 {
+		bucket.Spec.Timeout = &metav1.Duration{Duration: createSourceArgs.fetchTimeout}
+	}
+
 	if sourceBucketArgs.secretRef != "" {
 		bucket.Spec.SecretRef = &meta.LocalObjectReference{
 			Name: sourceBucketArgs.secretRef,

cmd/flux/create_source_git.go

@@ -143,7 +143,7 @@ func init() {
 
 func newSourceGitFlags() sourceGitFlags {
 	return sourceGitFlags{
-		keyAlgorithm:  flags.PublicKeyAlgorithm(sourcesecret.RSAPrivateKeyAlgorithm),
+		keyAlgorithm:  flags.PublicKeyAlgorithm(sourcesecret.ECDSAPrivateKeyAlgorithm),
 		keyRSABits:    2048,
 		keyECDSACurve: flags.ECDSACurve{Curve: elliptic.P384()},
 	}
@@ -206,6 +206,10 @@ func createSourceGitCmdRun(cmd *cobra.Command, args []string) error {
 		},
 	}
 
+	if createSourceArgs.fetchTimeout > 0 {
+		gitRepository.Spec.Timeout = &metav1.Duration{Duration: createSourceArgs.fetchTimeout}
+	}
+
 	if sourceGitArgs.gitImplementation != "" {
 		gitRepository.Spec.GitImplementation = sourceGitArgs.gitImplementation.String()
 	}

cmd/flux/create_source_git_test.go

@@ -1,5 +1,21 @@
 // +build unit
 
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import (

cmd/flux/create_source_helm.go

@@ -129,6 +129,10 @@ func createSourceHelmCmdRun(cmd *cobra.Command, args []string) error {
 		},
 	}
 
+	if createSourceArgs.fetchTimeout > 0 {
+		helmRepository.Spec.Timeout = &metav1.Duration{Duration: createSourceArgs.fetchTimeout}
+	}
+
 	if sourceHelmArgs.secretRef != "" {
 		helmRepository.Spec.SecretRef = &meta.LocalObjectReference{
 			Name: sourceHelmArgs.secretRef,

cmd/flux/export.go

@@ -113,8 +113,8 @@ func printExport(export interface{}) error {
 	if err != nil {
 		return err
 	}
-	fmt.Println("---")
-	fmt.Println(resourceToString(data))
+	rootCmd.Println("---")
+	rootCmd.Println(resourceToString(data))
 	return nil
 }
 

cmd/flux/export_test.go

@@ -0,0 +1,88 @@
+// +build unit
+
+package main
+
+import (
+	"testing"
+)
+
+func TestExport(t *testing.T) {
+	cases := []struct {
+		name       string
+		arg        string
+		goldenFile string
+	}{
+		{
+			"alert-provider",
+			"export alert-provider slack",
+			"testdata/export/provider.yaml",
+		},
+		{
+			"alert",
+			"export alert flux-system",
+			"testdata/export/alert.yaml",
+		},
+		{
+			"image policy",
+			"export image policy flux-system",
+			"testdata/export/image-policy.yaml",
+		},
+		{
+			"image repository",
+			"export image repository flux-system",
+			"testdata/export/image-repo.yaml",
+		},
+		{
+			"image update",
+			"export image update flux-system",
+			"testdata/export/image-update.yaml",
+		},
+		{
+			"source git",
+			"export source git flux-system",
+			"testdata/export/git-repo.yaml",
+		},
+		{
+			"source helm",
+			"export source helm flux-system",
+			"testdata/export/helm-repo.yaml",
+		},
+		{
+			"receiver",
+			"export receiver flux-system",
+			"testdata/export/receiver.yaml",
+		},
+		{
+			"kustomization",
+			"export kustomization flux-system",
+			"testdata/export/ks.yaml",
+		},
+		{
+			"helmrelease",
+			"export helmrelease flux-system",
+			"testdata/export/helm-release.yaml",
+		},
+		{
+			"bucket",
+			"export source bucket flux-system",
+			"testdata/export/bucket.yaml",
+		},
+	}
+
+	objectFile := "testdata/export/objects.yaml"
+	tmpl := map[string]string{
+		"fluxns": allocateNamespace("flux-system"),
+	}
+	testEnv.CreateObjectFile(objectFile, tmpl, t)
+
+	for _, tt := range cases {
+		t.Run(tt.name, func(t *testing.T) {
+			cmd := cmdTestCase{
+				args:   tt.arg + " -n=" + tmpl["fluxns"],
+				assert: assertGoldenTemplateFile(tt.goldenFile, tmpl),
+			}
+
+			cmd.runTestCmd(t)
+		})
+	}
+}

cmd/flux/helmrelease_test.go

@@ -1,5 +1,21 @@
 // +build e2e
 
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import "testing"

cmd/flux/install.go

@@ -21,7 +21,6 @@ import (
 	"fmt"
 	"os"
 	"path/filepath"
-	"strings"
 	"time"
 
 	"github.com/spf13/cobra"
@@ -177,11 +176,7 @@ func installCmdRun(cmd *cobra.Command, args []string) error {
 	}
 
 	if installArgs.export {
-		fmt.Println("---")
-		fmt.Println("# Flux version:", installArgs.version)
-		fmt.Println("# Components:", strings.Join(components, ","))
 		fmt.Print(manifest.Content)
-		fmt.Println("---")
 		return nil
 	} else if rootArgs.verbose {
 		fmt.Print(manifest.Content)
@@ -206,7 +201,7 @@ func installCmdRun(cmd *cobra.Command, args []string) error {
 	if err != nil {
 		return fmt.Errorf("install failed: %w", err)
 	}
-	statusChecker, err := status.NewStatusChecker(kubeConfig, time.Second, rootArgs.timeout, logger)
+	statusChecker, err := status.NewStatusChecker(kubeConfig, 5*time.Second, rootArgs.timeout, logger)
 	if err != nil {
 		return fmt.Errorf("install failed: %w", err)
 	}

cmd/flux/kustomization_test.go

@@ -1,5 +1,21 @@
 // +build e2e
 
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import "testing"

cmd/flux/logs.go

@@ -39,6 +39,7 @@ import (
 
 	"github.com/fluxcd/flux2/internal/flags"
 	"github.com/fluxcd/flux2/internal/utils"
+	"github.com/fluxcd/flux2/pkg/manifestgen"
 )
 
 var logsCmd = &cobra.Command{
@@ -93,7 +94,7 @@ func init() {
 }
 
 func logsCmdRun(cmd *cobra.Command, args []string) error {
-	fluxSelector := fmt.Sprintf("app.kubernetes.io/instance=%s", logsArgs.fluxNamespace)
+	fluxSelector := fmt.Sprintf("%s=%s", manifestgen.PartOfLabelKey, manifestgen.PartOfLabelValue)
 
 	ctx, cancel := context.WithTimeout(context.Background(), rootArgs.timeout)
 	defer cancel()

cmd/flux/logs_test.go

@@ -1,5 +1,21 @@
 // +build unit
 
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import (

cmd/flux/main.go

@@ -17,12 +17,16 @@ limitations under the License.
 package main
 
 import (
+	"bufio"
+	"fmt"
 	"log"
 	"os"
 	"path/filepath"
+	"strings"
 	"time"
 
 	"github.com/spf13/cobra"
+	"golang.org/x/term"
 	corev1 "k8s.io/api/core/v1"
 	_ "k8s.io/client-go/plugin/pkg/client/auth"
 
@@ -107,7 +111,8 @@ type rootFlags struct {
 var rootArgs = NewRootFlags()
 
 func init() {
-	rootCmd.PersistentFlags().StringVarP(&rootArgs.namespace, "namespace", "n", rootArgs.defaults.Namespace, "the namespace scope for this operation")
+	rootCmd.PersistentFlags().StringVarP(&rootArgs.namespace, "namespace", "n", rootArgs.defaults.Namespace,
+		"the namespace scope for this operation, can be set with FLUX_SYSTEM_NAMESPACE env var")
 	rootCmd.RegisterFlagCompletionFunc("namespace", resourceNamesCompletionFunc(corev1.SchemeGroupVersion.WithKind("Namespace")))
 
 	rootCmd.PersistentFlags().DurationVar(&rootArgs.timeout, "timeout", 5*time.Minute, "timeout for this operation")
@@ -119,6 +124,7 @@ func init() {
 	rootCmd.RegisterFlagCompletionFunc("context", contextsCompletionFunc)
 
 	rootCmd.DisableAutoGenTag = true
+	rootCmd.SetOut(os.Stdout)
 }
 
 func NewRootFlags() rootFlags {
@@ -133,6 +139,7 @@ func NewRootFlags() rootFlags {
 func main() {
 	log.SetFlags(0)
 	configureKubeconfig()
+	configureDefaultNamespace()
 	if err := rootCmd.Execute(); err != nil {
 		logger.Failuref("%v", err)
 		os.Exit(1)
@@ -151,9 +158,38 @@ func configureKubeconfig() {
 	}
 }
 
+func configureDefaultNamespace() {
+	fromEnv := os.Getenv("FLUX_SYSTEM_NAMESPACE")
+	if fromEnv != "" && rootArgs.namespace == rootArgs.defaults.Namespace {
+		rootArgs.namespace = fromEnv
+	}
+}
+
 func homeDir() string {
 	if h := os.Getenv("HOME"); h != "" {
 		return h
 	}
 	return os.Getenv("USERPROFILE") // windows
 }
+
+// readPasswordFromStdin reads a password from stdin and returns the input
+// with trailing newline and/or carriage return removed. It also makes sure that terminal
+// echoing is turned off if stdin is a terminal.
+func readPasswordFromStdin(prompt string) (string, error) {
+	var out string
+	var err error
+	fmt.Fprint(os.Stdout, prompt)
+	stdinFD := int(os.Stdin.Fd())
+	if term.IsTerminal(stdinFD) {
+		var inBytes []byte
+		inBytes, err = term.ReadPassword(int(os.Stdin.Fd()))
+		out = string(inBytes)
+	} else {
+		out, err = bufio.NewReader(os.Stdin).ReadString('\n')
+	}
+	if err != nil {
+		return "", fmt.Errorf("could not read from stdin: %w", err)
+	}
+	fmt.Println()
+	return strings.TrimRight(out, "\r\n"), nil
+}

cmd/flux/main_e2e_test.go

@@ -1,5 +1,21 @@
 // +build e2e
 
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import (

cmd/flux/main_test.go

@@ -1,3 +1,19 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import (
@@ -295,6 +311,7 @@ func executeTemplate(content string, templateValues map[string]string) (string,
 
 // Run the command and return the captured output.
 func executeCommand(cmd string) (string, error) {
+	defer resetCmdArgs()
 	args, err := shellwords.Parse(cmd)
 	if err != nil {
 		return "", err
@@ -313,3 +330,9 @@ func executeCommand(cmd string) (string, error) {
 
 	return result, err
 }
+
+func resetCmdArgs() {
+	createArgs = createFlags{}
+	getArgs = GetFlags{}
+	secretGitArgs = NewSecretGitFlags()
+}

cmd/flux/main_unit_test.go

@@ -1,5 +1,21 @@
 // +build unit
 
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import (

cmd/flux/manifests.embed.go

@@ -1,3 +1,19 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package main
 
 import (

cmd/flux/reconcile.go

@@ -122,7 +122,7 @@ func (reconcile reconcileCommand) run(cmd *cobra.Command, args []string) error {
 	}
 
 	if readyCond.Status != metav1.ConditionTrue {
-		return fmt.Errorf("%s reconciliation failed: ''%s", reconcile.kind, readyCond.Message)
+		return fmt.Errorf("%s reconciliation failed: '%s'", reconcile.kind, readyCond.Message)
 	}
 	logger.Successf(reconcile.object.successMessage())
 	return nil

cmd/flux/resume.go

@@ -42,7 +42,7 @@ var resumeArgs ResumeFlags
 
 func init() {
 	resumeCmd.PersistentFlags().BoolVarP(&resumeArgs.all, "all", "", false,
-		"suspend all resources in that namespace")
+		"resume all resources in that namespace")
 	rootCmd.AddCommand(resumeCmd)
 }
 

cmd/flux/testdata/create_secret/git/ecdsa-password.private

@@ -0,0 +1,10 @@
+-----BEGIN OPENSSH PRIVATE KEY-----
+b3BlbnNzaC1rZXktdjEAAAAACmFlczI1Ni1jdHIAAAAGYmNyeXB0AAAAGAAAABA9i7hZ7m
+UBPxF7GuUswZiXAAAAEAAAAAEAAABoAAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlz
+dHAyNTYAAABBBOOAQfhwylg6WhJRXha2K1dJY5BG12nsS7YyFlKPAovOAC8d8rTOzjjDWu
+kG24JVRrXoWUN6eWWvxDvMd5pZT1wAAADAepYZPGTQnH6genhU+y9aD1GFO8BsODIllxEq
+T8n2eLAmPWYLv4HhgtmbqtsOmTE9sVM5ynYj/dAX1SreoGeoMEVFIt1cYtWgyuJccEiK4t
+1JQLFLMKnBRTY+yIdD6gX7tLRRL/jqzMR4XZF5/Yf48lvU4h+ljuOitWH3ea9142izl2Wk
+eXAfeoezJaDntZUUEYvKMI5U6iWVni+c7vOcJFTZgBeV4i54ua06tY5mE/mWARldiSDtJG
+yGEOankDnf
+-----END OPENSSH PRIVATE KEY-----

cmd/flux/testdata/create_secret/git/ecdsa.private

@@ -0,0 +1,9 @@
+-----BEGIN OPENSSH PRIVATE KEY-----
+b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAaAAAABNlY2RzYS
+1zaGEyLW5pc3RwMjU2AAAACG5pc3RwMjU2AAAAQQTuiu+gGwLIu9E5J4vRshoIBHScKx4Y
+f9oniWMsLFHXq5p9GJ/eb9Cr3jgNACnGOIGOqlwBQvP5rCJuaJ0pCRKUAAAAuNE1GtvRNR
+rbAAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlzdHAyNTYAAABBBO6K76AbAsi70Tkn
+i9GyGggEdJwrHhh/2ieJYywsUdermn0Yn95v0KveOA0AKcY4gY6qXAFC8/msIm5onSkJEp
+QAAAAhAPaO6PiN+1238KMrHg34M7XdftGypt2/UKEz2L2Pf40yAAAAH3NvbXRvY2hpb255
+ZWt3ZXJlQFNvbXRvY2hpcy1NQlA=
+-----END OPENSSH PRIVATE KEY-----

cmd/flux/testdata/create_secret/git/git-ssh-secret-password.yaml

@@ -0,0 +1,23 @@
+---
+apiVersion: v1
+kind: Secret
+metadata:
+  name: podinfo-auth
+  namespace: my-namespace
+stringData:
+  identity: |
+    -----BEGIN OPENSSH PRIVATE KEY-----
+    b3BlbnNzaC1rZXktdjEAAAAACmFlczI1Ni1jdHIAAAAGYmNyeXB0AAAAGAAAABA9i7hZ7m
+    UBPxF7GuUswZiXAAAAEAAAAAEAAABoAAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlz
+    dHAyNTYAAABBBOOAQfhwylg6WhJRXha2K1dJY5BG12nsS7YyFlKPAovOAC8d8rTOzjjDWu
+    kG24JVRrXoWUN6eWWvxDvMd5pZT1wAAADAepYZPGTQnH6genhU+y9aD1GFO8BsODIllxEq
+    T8n2eLAmPWYLv4HhgtmbqtsOmTE9sVM5ynYj/dAX1SreoGeoMEVFIt1cYtWgyuJccEiK4t
+    1JQLFLMKnBRTY+yIdD6gX7tLRRL/jqzMR4XZF5/Yf48lvU4h+ljuOitWH3ea9142izl2Wk
+    eXAfeoezJaDntZUUEYvKMI5U6iWVni+c7vOcJFTZgBeV4i54ua06tY5mE/mWARldiSDtJG
+    yGEOankDnf
+    -----END OPENSSH PRIVATE KEY-----
+  identity.pub: |
+    ecdsa-sha2-nistp256 AAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlzdHAyNTYAAABBBOOAQfhwylg6WhJRXha2K1dJY5BG12nsS7YyFlKPAovOAC8d8rTOzjjDWukG24JVRrXoWUN6eWWvxDvMd5pZT1w=
+  known_hosts: github.com ecdsa-sha2-nistp256 AAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlzdHAyNTYAAABBBEmKSENjQEezOmxkZMy7opKgwFB9nkt5YRrYMjNuG5N87uRgg6CLrbo5wAdT/y6v0mKV0U2w0WZ2YB/++Tpockg=
+  password: password
+

cmd/flux/testdata/create_secret/git/git-ssh-secret.yaml

@@ -0,0 +1,21 @@
+---
+apiVersion: v1
+kind: Secret
+metadata:
+  name: podinfo-auth
+  namespace: my-namespace
+stringData:
+  identity: |
+    -----BEGIN OPENSSH PRIVATE KEY-----
+    b3BlbnNzaC1rZXktdjEAAAAABG5vbmUAAAAEbm9uZQAAAAAAAAABAAAAaAAAABNlY2RzYS
+    1zaGEyLW5pc3RwMjU2AAAACG5pc3RwMjU2AAAAQQTuiu+gGwLIu9E5J4vRshoIBHScKx4Y
+    f9oniWMsLFHXq5p9GJ/eb9Cr3jgNACnGOIGOqlwBQvP5rCJuaJ0pCRKUAAAAuNE1GtvRNR
+    rbAAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlzdHAyNTYAAABBBO6K76AbAsi70Tkn
+    i9GyGggEdJwrHhh/2ieJYywsUdermn0Yn95v0KveOA0AKcY4gY6qXAFC8/msIm5onSkJEp
+    QAAAAhAPaO6PiN+1238KMrHg34M7XdftGypt2/UKEz2L2Pf40yAAAAH3NvbXRvY2hpb255
+    ZWt3ZXJlQFNvbXRvY2hpcy1NQlA=
+    -----END OPENSSH PRIVATE KEY-----
+  identity.pub: |
+    ecdsa-sha2-nistp256 AAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlzdHAyNTYAAABBBO6K76AbAsi70Tkni9GyGggEdJwrHhh/2ieJYywsUdermn0Yn95v0KveOA0AKcY4gY6qXAFC8/msIm5onSkJEpQ=
+  known_hosts: github.com ecdsa-sha2-nistp256 AAAAE2VjZHNhLXNoYTItbmlzdHAyNTYAAAAIbmlzdHAyNTYAAABBBEmKSENjQEezOmxkZMy7opKgwFB9nkt5YRrYMjNuG5N87uRgg6CLrbo5wAdT/y6v0mKV0U2w0WZ2YB/++Tpockg=
+

cmd/flux/testdata/create_secret/git/secret-git-basic.yaml

@@ -0,0 +1,10 @@
+---
+apiVersion: v1
+kind: Secret
+metadata:
+  name: podinfo-auth
+  namespace: my-namespace
+stringData:
+  password: my-password
+  username: my-username
+

cmd/flux/testdata/create_secret/helm/secret-helm.yaml

@@ -0,0 +1,10 @@
+---
+apiVersion: v1
+kind: Secret
+metadata:
+  name: helm-secret
+  namespace: my-namespace
+stringData:
+  password: my-password
+  username: my-username
+

cmd/flux/testdata/create_secret/tls/secret-tls.yaml

@@ -0,0 +1,92 @@
+---
+apiVersion: v1
+kind: Secret
+metadata:
+  name: certs
+  namespace: my-namespace
+stringData:
+  certFile: |
+    -----BEGIN CERTIFICATE-----
+    MIIFazCCA1OgAwIBAgIUT84jeO/ncOrqI+FY05Fzbg8Ed7MwDQYJKoZIhvcNAQEL
+    BQAwRTELMAkGA1UEBhMCQVUxEzARBgNVBAgMClNvbWUtU3RhdGUxITAfBgNVBAoM
+    GEludGVybmV0IFdpZGdpdHMgUHR5IEx0ZDAeFw0yMTA4MDgxNDQyMzVaFw0yMjA4
+    MDgxNDQyMzVaMEUxCzAJBgNVBAYTAkFVMRMwEQYDVQQIDApTb21lLVN0YXRlMSEw
+    HwYDVQQKDBhJbnRlcm5ldCBXaWRnaXRzIFB0eSBMdGQwggIiMA0GCSqGSIb3DQEB
+    AQUAA4ICDwAwggIKAoICAQDn/rPsZ74oypiwCzLlx57zplTiCi/WLSF+MmLGuTvM
+    EQnV+OND2zFgvDIV/vFs3brkd6rLVI4NcdgSj4YKULCMwwOl45hQPdCTEPJvUhCm
+    M+FuQ0czmEEJSjZtdLFz1B7QB/JemNnbfigxM9mlg58AlBhVJqn8q64wd/kC/W/K
+    JTLJuBiVf12ZiPoPfO4WSxAqD3opZ8gdbmK0KYQAhKjEto6ZrYGisfwU1gt3l8M7
+    sCJSpEkOkpuQgJ8D+xzJS36VXBJQMMP9nAPps+x/rGFplsPMsXEFFiwvR1+FJZwz
+    lg2sJ91bLGZQ7vn74MfsGrxpiJwllRThJyT7C9V0sjb5trT2lEqZlP2dRSJYt7aJ
+    1crEcdGSl6RIKgxSV6Hk8dh/ZaTjrTwaKxVkPo2IeEXy5xrR7DyonOQ6Yes0KOCm
+    JB5yHkFlIVEnLm/HZXEtm3bPHsFgTZuInyBCOMXpUESuVZIw8YK+Vd6AExGPPwZ4
+    n5I/sCDxWII9owIj3LeLzdUG6JoroahhGmo8rgpbJpPnS+VgryQ/raUQjqDzDCuE
+    9vKXKBlSUqK6H9A+NMc0mme7M8/GX7T7ewFGUB/xsdrcO4yXjqHnAe0yLf8epDjC
+    hh76bYqwwinVrmfcNcRxFVJZW2z0gGdgkOkOLaVVb9ggPV2SNAHbN4A+St/iRYR5
+    awIDAQABo1MwUTAdBgNVHQ4EFgQUzMaCqVM30EZFfTeNUIJ5fNPAhaQwHwYDVR0j
+    BBgwFoAUzMaCqVM30EZFfTeNUIJ5fNPAhaQwDwYDVR0TAQH/BAUwAwEB/zANBgkq
+    hkiG9w0BAQsFAAOCAgEAVmk1rXtVkYR1Vs2Va/xrUaGXlFznhPU/Fft44kiEkkLp
+    mLVelWyAqvXYioqssZwuZnTjGz0DQPqzJjqwuGy4CHwPLmhCtfHplrbWo8a0ivYC
+    cL20KfZsG941siUh7LGBjTsq6mWBf2ytlFmg/fg93SgmqcEUAUcdps0JpZD8lgWB
+    ZMstfr6E3jaEus3OsvDD6hJNYZ5clJ5+ynLoWZ99A9JC0U46hmIZpRjbdSvasKpD
+    XrXTdpzyL/Do3znXE/yfoHv4//Rj2CpPHJLYRCIzvuf1mo1fWd53FjHvrbUvaHFz
+    CGuZROd4dC4Rx5nZw2ogIYvJ8m6HpIDkL3pBNSQJtIsvAYEQcotJoa5D/e9fu2Wr
+    +og37oCY4OXzViEBQvyxKD4cajNco1fgGKEaFROADwr3JceGI7Anq5W+xdUvAGNM
+    QuGeCueqNyrJ0CbQ1zEhwgpk/VYfB0u9m0bjMellRlKMdojby+FDCJtAJesx9no4
+    SQXyx+aNHhj3qReysjGNwZvBk1IHL04HAT+ogNiYhTl1J/YON4MB5UN6Y2PxP6uG
+    KvJGPigx4fAwfR/d78o5ngwoH9m+8FUg8+qllJ8XgIbl/VXKTk3G4ceOm4eBmrel
+    DwWuBhELSjtXWPWhMlkiebgejDbAear53Lia2Cc43zx/KuhMHBTlKY/vY4F2YiI=
+    -----END CERTIFICATE-----
+  keyFile: |
+    -----BEGIN PRIVATE KEY-----
+    MIIJRAIBADANBgkqhkiG9w0BAQEFAASCCS4wggkqAgEAAoICAQDn/rPsZ74oypiw
+    CzLlx57zplTiCi/WLSF+MmLGuTvMEQnV+OND2zFgvDIV/vFs3brkd6rLVI4NcdgS
+    j4YKULCMwwOl45hQPdCTEPJvUhCmM+FuQ0czmEEJSjZtdLFz1B7QB/JemNnbfigx
+    M9mlg58AlBhVJqn8q64wd/kC/W/KJTLJuBiVf12ZiPoPfO4WSxAqD3opZ8gdbmK0
+    KYQAhKjEto6ZrYGisfwU1gt3l8M7sCJSpEkOkpuQgJ8D+xzJS36VXBJQMMP9nAPp
+    s+x/rGFplsPMsXEFFiwvR1+FJZwzlg2sJ91bLGZQ7vn74MfsGrxpiJwllRThJyT7
+    C9V0sjb5trT2lEqZlP2dRSJYt7aJ1crEcdGSl6RIKgxSV6Hk8dh/ZaTjrTwaKxVk
+    Po2IeEXy5xrR7DyonOQ6Yes0KOCmJB5yHkFlIVEnLm/HZXEtm3bPHsFgTZuInyBC
+    OMXpUESuVZIw8YK+Vd6AExGPPwZ4n5I/sCDxWII9owIj3LeLzdUG6JoroahhGmo8
+    rgpbJpPnS+VgryQ/raUQjqDzDCuE9vKXKBlSUqK6H9A+NMc0mme7M8/GX7T7ewFG
+    UB/xsdrcO4yXjqHnAe0yLf8epDjChh76bYqwwinVrmfcNcRxFVJZW2z0gGdgkOkO
+    LaVVb9ggPV2SNAHbN4A+St/iRYR5awIDAQABAoICAQCTxuixQ/wbW8IbEWcgeyHD
+    LkaPndGO6jyVeF73GvL+MDRFuj558NvpNLfqzvTWVf9AnQGMd5Xs9oGegRHu7Csp
+    3ucp+moBYv7DT14+jtXQKOgGJpDqSqfS1RUKb/TBRXNDLGy02UScziWoAdE33zmf
+    UraVNwW8z1crxKA3yVw2Na++UqhGQlVLAbfXucqnJLVtNWKpkVQlezUgcfmFovsm
+    Iut+9MjI6/sZAqdXTLKuCKo0XjWzNKwnRecE0CYsCwzc80MvFYEiwQi1C0kwoouC
+    iOi8MKM/jDok+5/a3nQ7X+/ho5sbApNCJpfSXAK9YOJ3ju93+RjNuvORfp4/sW3W
+    OGXw6X30Ym7WS/7oYuwEILyqdyNOvKU7a+17d/W/YA60NOdA4iJI3aTfYFMD3l14
+    Da+D/wkTlEN3Ye7GN21A9AsZwWWiT9G5FOxWWVv7nTPG+Ix5ewehQWt/3DxhSizR
+    inMBizL5xpwx9LRWHnXX277lChYmPFAAMXINl1hnX6s0EY9pSDHN0IddibJkNKBD
+    m1CN37rqxoXQz4zoAyJGfQVkakqe16ayqI9yuQwO6AUkZcD5DYQdz9QYOTnYrQc6
+    6haC3D0Fmqg1s4v+6gpxZA/qTri0gVl/v/NN4Mk2/qWtK33imOedgD+5LXhZdBgJ
+    Mqn53AErG/AT622jvSb5UQKCAQEA/DTGLh0Ct97PCm+c+PxRFyieaHNJLWENKyxp
+    HoWGHfp2Bvt2Vphoi7GpRCM/yta4vCZgZmeWTQ0yBg6iPVPRA6Ho5hqh9OkUYVoh
+    prL3JsIU20jTutYjo2aefO4qXnJfkkXxNO2FElUHDTwtWdlGJQKvlUJwTv6xO19v
+    bQQkhZSpri6gIpi5Nkm2SGEtDofRJ+F6ThbQibEatL6DR00dh39MYQz+tZP5olzn
+    kX5bHEBWB7gy+YxTGF8FdlCSQTBBtNSKsAv3Cxj4qEHm+fu09vnH6fOZKenT2nXD
+    5QE/RpgQzLV1TumCjqLzqwp7bbzH+4mjsXpF3KHBZwnhMnDIRwKCAQEA63wYzjBy
+    no0GBBz0hOWrOwQ/AjUHfi47o3Xvl4RBjZclM171HKH7oMCnQvVKTNq8jvakCZjc
+    UI6i+H4R6aokiFS2xGbC2H3ZlSMFNwhb2xUs/C4Nr7JSOWZBtDy5QBspUsp26f7m
+    9VNVRzCmnxWV9be/1TxHDzDhslNlL5TMejbMorWnrtNG41KWwGtwvv2gApr3894j
+    eJNOh0WGfsMkXUM6+4v4WcCGrdV8Cr6Nvu96ZZe2PWu2dANtAfnxqogXXCoFE6r1
+    vie7hFSfJ2QR/vEbanED4pYGTtGYP1oseScx0u0hLhGLGccVBUNZlRbox4rIOELI
+    v9MLuiOL4YX7vQKCAQAGzMl3HtMe8AP3DRFXaT4qeK7ktA8KCS7YtibTatg14LXj
+    9E25gfx3n7+nlae3qVhrwkEhIbPcuflaTnSzYJonFet4oMkzGEGzakG0A+lEA0Ga
+    s/j5daKaWj71sVo1F7JZ+EbLnYfT+bTp93BllsUcZFkllhf/GUDgD++qKc1uSJbW
+    mm044ZNE0nH2u6ACX0kVYS/yAQ14WO0WaHiTqJGeQKFnkHkhni7B4O1hb923AkkP
+    hjjhn5Xx90Xnbb6zwUBURtLCcmAjzXWO29AFd3Lmoc9xEF9V0PckUb6JYyI4ngr9
+    6fqSuRsLC3u0ZeD0EX322zwtodVWYIodZBfNS1srAoIBAQCjTUPGeUKDQTjS0WGg
+    Z8T/AErRtQSlNFqXWMn2QPlUv2RE460HVi2xpOhZPtFvyqDIY7IOFbtzAfdya7rw
+    V9VN1bGJMdodV+jzy31qVJmerGit2SIUnYz30TnvS80L78oQZ+dfDi4MIuYYoFxs
+    JgQAipS1wz9kAXoCuGKLRJ0og6gVjfPjARE/w55XgiqFyEyWgfFBZOMkUsM6e7Rx
+    Y9Jr+puEpeRsGV9MXafPq6WQq3It0a/HmFLG0TlfDX3RzN6mQ12R7hTM8bDQa/6S
+    yorQSVPB1O3kzDVDo4X5KQd+XPfoVhmUYQYdsjmZlMMi6Og0uMFwgp/Epw6S3uO6
+    WbfhAoIBAQCOp4iIc87GyxWL8u6HrJaqmFlqkfou0hI+y9h6FfzsBYU6y3+gRYdF
+    wr2S9EUAb80kEQ1v0pt9417NOGc1pmYjKCZmDZ7qeGCGk2PR0U59+xJetXBWWhbq
+    5JxcwdRYoHyrmC/LINxzzqYOQbQevbW0zcEskeKfJsOtj9WJt6U9B1YZbE8pu2QV
+    xjvb+YekD2R+n/umV6eiaGfDau+EWudYVTqY0mR7y9hTiFR/KnqSsy2BUjljpacS
+    XBQO4ig7vY8+1+L3w2xpTN95/rXAvB4BbO/DLea9ArikePoSJ+bVTj0YwrKBghep
+    kOvbvVANrpsunlSAcpXm1qkV+G+xPnyJ
+    -----END PRIVATE KEY-----

cmd/flux/testdata/create_secret/tls/test-cert.pem

@@ -0,0 +1,31 @@
+-----BEGIN CERTIFICATE-----
+MIIFazCCA1OgAwIBAgIUT84jeO/ncOrqI+FY05Fzbg8Ed7MwDQYJKoZIhvcNAQEL
+BQAwRTELMAkGA1UEBhMCQVUxEzARBgNVBAgMClNvbWUtU3RhdGUxITAfBgNVBAoM
+GEludGVybmV0IFdpZGdpdHMgUHR5IEx0ZDAeFw0yMTA4MDgxNDQyMzVaFw0yMjA4
+MDgxNDQyMzVaMEUxCzAJBgNVBAYTAkFVMRMwEQYDVQQIDApTb21lLVN0YXRlMSEw
+HwYDVQQKDBhJbnRlcm5ldCBXaWRnaXRzIFB0eSBMdGQwggIiMA0GCSqGSIb3DQEB
+AQUAA4ICDwAwggIKAoICAQDn/rPsZ74oypiwCzLlx57zplTiCi/WLSF+MmLGuTvM
+EQnV+OND2zFgvDIV/vFs3brkd6rLVI4NcdgSj4YKULCMwwOl45hQPdCTEPJvUhCm
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+DwWuBhELSjtXWPWhMlkiebgejDbAear53Lia2Cc43zx/KuhMHBTlKY/vY4F2YiI=
+-----END CERTIFICATE-----

cmd/flux/testdata/create_secret/tls/test-key.pem

@@ -0,0 +1,52 @@
+-----BEGIN PRIVATE KEY-----
+MIIJRAIBADANBgkqhkiG9w0BAQEFAASCCS4wggkqAgEAAoICAQDn/rPsZ74oypiw
+CzLlx57zplTiCi/WLSF+MmLGuTvMEQnV+OND2zFgvDIV/vFs3brkd6rLVI4NcdgS
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+kOvbvVANrpsunlSAcpXm1qkV+G+xPnyJ
+-----END PRIVATE KEY-----

cmd/flux/testdata/export/alert.yaml

@@ -0,0 +1,17 @@
+---
+apiVersion: notification.toolkit.fluxcd.io/v1beta1
+kind: Alert
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  eventSeverity: info
+  eventSources:
+  - kind: GitRepository
+    name: '*'
+  - kind: Kustomization
+    name: '*'
+  providerRef:
+    name: slack
+  summary: Slacktest Notification
+

cmd/flux/testdata/export/bucket.yaml

@@ -0,0 +1,14 @@
+---
+apiVersion: source.toolkit.fluxcd.io/v1beta1
+kind: Bucket
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  bucketName: podinfo
+  endpoint: s3.amazonaws.com
+  interval: 5m0s
+  provider: aws
+  region: us-east-1
+  timeout: 30s
+

cmd/flux/testdata/export/git-repo.yaml

@@ -0,0 +1,16 @@
+---
+apiVersion: source.toolkit.fluxcd.io/v1beta1
+kind: GitRepository
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  gitImplementation: go-git
+  interval: 5m0s
+  ref:
+    branch: main
+  secretRef:
+    name: flux-system
+  timeout: 20s
+  url: ssh://git@github.com/example/repo
+

cmd/flux/testdata/export/helm-release.yaml

@@ -0,0 +1,18 @@
+---
+apiVersion: helm.toolkit.fluxcd.io/v2beta1
+kind: HelmRelease
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  chart:
+    spec:
+      chart: podinfo
+      reconcileStrategy: ChartVersion
+      sourceRef:
+        kind: HelmRepository
+        name: flux-systen
+        namespace: {{ .fluxns }}
+      version: '*'
+  interval: 5m0s
+

cmd/flux/testdata/export/helm-repo.yaml

@@ -0,0 +1,11 @@
+---
+apiVersion: source.toolkit.fluxcd.io/v1beta1
+kind: HelmRepository
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  interval: 5m0s
+  timeout: 1m0s
+  url: https://stefanprodan.github.io/podinfo
+

cmd/flux/testdata/export/image-policy.yaml

@@ -0,0 +1,13 @@
+---
+apiVersion: image.toolkit.fluxcd.io/v1beta1
+kind: ImagePolicy
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  imageRepositoryRef:
+    name: flux-system
+  policy:
+    semver:
+      range: 5.0.x
+

cmd/flux/testdata/export/image-repo.yaml

@@ -0,0 +1,10 @@
+---
+apiVersion: image.toolkit.fluxcd.io/v1beta1
+kind: ImageRepository
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  image: ghcr.io/test/podinfo
+  interval: 1m0s
+

cmd/flux/testdata/export/image-update.yaml

@@ -0,0 +1,20 @@
+---
+apiVersion: image.toolkit.fluxcd.io/v1beta1
+kind: ImageUpdateAutomation
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  git:
+    commit:
+      author:
+        email: fluxcdbot@users.noreply.github.com
+        name: fluxcdbot
+  interval: 1m0s
+  sourceRef:
+    kind: GitRepository
+    name: flux-system
+  update:
+    path: ./clusters/my-cluster
+    strategy: Setters
+

cmd/flux/testdata/export/ks.yaml

@@ -0,0 +1,14 @@
+---
+apiVersion: kustomize.toolkit.fluxcd.io/v1beta2
+kind: Kustomization
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  interval: 5m0s
+  path: ./infrastructure/
+  prune: true
+  sourceRef:
+    kind: GitRepository
+    name: flux-system
+

cmd/flux/testdata/export/objects.yaml

@@ -0,0 +1,153 @@
+---
+apiVersion: v1
+kind: Namespace
+metadata:
+  name: {{ .fluxns }}
+---
+apiVersion: notification.toolkit.fluxcd.io/v1beta1
+kind: Provider
+metadata:
+  name: slack
+  namespace: {{ .fluxns }}
+spec:
+  type: slack
+  channel: 'A channel with spacess'
+  address: https://hooks.slack.com/services/mock
+---
+apiVersion: notification.toolkit.fluxcd.io/v1beta1
+kind: Alert
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  summary: "Slacktest Notification"
+  providerRef:
+    name: slack
+  eventSeverity: info
+  eventSources:
+    - kind: "GitRepository"
+      name: "*"
+    - kind: "Kustomization"
+      name: "*"
+---
+apiVersion: image.toolkit.fluxcd.io/v1beta1
+kind: ImageRepository
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  image: ghcr.io/test/podinfo
+  interval: 1m0s
+---
+apiVersion: image.toolkit.fluxcd.io/v1beta1
+kind: ImagePolicy
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  imageRepositoryRef:
+    name: flux-system
+  policy:
+    semver:
+      range: 5.0.x
+---
+apiVersion: image.toolkit.fluxcd.io/v1beta1
+kind: ImageUpdateAutomation
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  interval: 1m0s
+  sourceRef:
+    kind: GitRepository
+    name: flux-system
+  git:
+    commit:
+      author:
+        email: fluxcdbot@users.noreply.github.com
+        name: fluxcdbot
+      messageTemplate: '{{range .Updated.Images}}{{println .}}{{end}}'
+  update:
+    path: ./clusters/my-cluster
+    strategy: Setters
+---
+apiVersion: source.toolkit.fluxcd.io/v1beta1
+kind: GitRepository
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  ref:
+    branch: main
+  secretRef:
+    name: flux-system
+  interval: 5m
+  url: ssh://git@github.com/example/repo
+---
+apiVersion: kustomize.toolkit.fluxcd.io/v1beta1
+kind: Kustomization
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  path: ./infrastructure/
+  sourceRef:
+    kind: GitRepository
+    name: flux-system
+  interval: 5m
+  prune: true
+---
+apiVersion: notification.toolkit.fluxcd.io/v1beta1
+kind: Receiver
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  type: github
+  events:
+    - "ping"
+    - "push"
+  secretRef:
+    name: webhook-token
+  resources:
+    - kind: GitRepository
+      name: flux-system
+      namespace: flux-system
+---
+apiVersion: source.toolkit.fluxcd.io/v1beta1
+kind: HelmRepository
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  interval: 5m
+  timeout: 1m0s
+  url: https://stefanprodan.github.io/podinfo
+---
+apiVersion: helm.toolkit.fluxcd.io/v2beta1
+kind: HelmRelease
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  interval: 5m
+  chart:
+    spec:
+      chart: podinfo
+      sourceRef:
+        kind: HelmRepository
+        name: flux-systen
+        namespace: {{ .fluxns }}
+---
+apiVersion: source.toolkit.fluxcd.io/v1beta1
+kind: Bucket
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  interval: 5m
+  provider: aws
+  bucketName: podinfo
+  endpoint: s3.amazonaws.com
+  region: us-east-1
+  timeout: 30s

cmd/flux/testdata/export/provider.yaml

@@ -0,0 +1,11 @@
+---
+apiVersion: notification.toolkit.fluxcd.io/v1beta1
+kind: Provider
+metadata:
+  name: slack
+  namespace: {{ .fluxns }}
+spec:
+  address: https://hooks.slack.com/services/mock
+  channel: A channel with spacess
+  type: slack
+

cmd/flux/testdata/export/receiver.yaml

@@ -0,0 +1,18 @@
+---
+apiVersion: notification.toolkit.fluxcd.io/v1beta1
+kind: Receiver
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  events:
+  - ping
+  - push
+  resources:
+  - kind: GitRepository
+    name: flux-system
+    namespace: flux-system
+  secretRef:
+    name: webhook-token
+  type: github
+

cmd/flux/testdata/tree/kustomizations.yaml

@@ -0,0 +1,88 @@
+---
+apiVersion: v1
+kind: Namespace
+metadata:
+  name: {{ .fluxns }}
+---
+apiVersion: kustomize.toolkit.fluxcd.io/v1beta2
+kind: Kustomization
+metadata:
+  name: flux-system
+  namespace: {{ .fluxns }}
+spec:
+  path: ./clusters/production
+  sourceRef:
+    kind: GitRepository
+    name: flux-system
+  interval: 5m
+  prune: true
+status:
+  conditions:
+  - lastTransitionTime: "2021-08-01T04:52:56Z"
+    message: 'Applied revision: main/696f056df216eea4f9401adbee0ff744d4df390f'
+    reason: ReconciliationSucceeded
+    status: "True"
+    type: Ready
+  inventory:
+    entries:
+      - id: _{{ .fluxns }}__Namespace
+        v: v1
+      - id: {{ .fluxns }}_helm-controller_apps_Deployment
+        v: v1
+      - id: {{ .fluxns }}_kustomize-controller_apps_Deployment
+        v: v1
+      - id: {{ .fluxns }}_notification-controller_apps_Deployment
+        v: v1
+      - id: {{ .fluxns }}_source-controller_apps_Deployment
+        v: v1
+      - id: {{ .fluxns }}_infrastructure_kustomize.toolkit.fluxcd.io_Kustomization
+        v: v1beta2
+      - id: {{ .fluxns }}_flux-system_source.toolkit.fluxcd.io_GitRepository
+        v: v1beta1
+---
+apiVersion: kustomize.toolkit.fluxcd.io/v1beta2
+kind: Kustomization
+metadata:
+  name: infrastructure
+  namespace: {{ .fluxns }}
+spec:
+  path: ./infrastructure/production
+  sourceRef:
+    kind: GitRepository
+    name: flux-system
+  interval: 5m
+  prune: true
+status:
+  conditions:
+    - lastTransitionTime: "2021-08-01T04:52:56Z"
+      message: 'Applied revision: main/696f056df216eea4f9401adbee0ff744d4df390f'
+      reason: ReconciliationSucceeded
+      status: "True"
+      type: Ready
+  inventory:
+    entries:
+      - id: _cert-manager__Namespace
+        v: v1
+      - id: cert-manager_cert-manager_source.toolkit.fluxcd.io_HelmRepository
+        v: v1beta1
+---
+apiVersion: kustomize.toolkit.fluxcd.io/v1beta2
+kind: Kustomization
+metadata:
+  name: empty
+  namespace: {{ .fluxns }}
+spec:
+  path: ./apps/todo
+  sourceRef:
+    kind: GitRepository
+    name: flux-system
+  interval: 5m
+  prune: true
+status:
+  conditions:
+    - lastTransitionTime: "2021-08-01T04:52:56Z"
+      message: 'Applied revision: main/696f056df216eea4f9401adbee0ff744d4df390f'
+      reason: ReconciliationSucceeded
+      status: "True"
+      type: Ready
+---

cmd/flux/testdata/tree/tree-compact.golden

@@ -0,0 +1,5 @@
+Kustomization/{{ .fluxns }}/flux-system
+├── Kustomization/{{ .fluxns }}/infrastructure
+│   └── HelmRepository/cert-manager/cert-manager
+└── GitRepository/{{ .fluxns }}/flux-system
+

cmd/flux/testdata/tree/tree-empty.golden

@@ -0,0 +1,2 @@
+Kustomization/{{ .fluxns }}/empty
+

cmd/flux/testdata/tree/tree.golden

@@ -0,0 +1,11 @@
+Kustomization/{{ .fluxns }}/flux-system
+├── Namespace/{{ .fluxns }}
+├── Deployment/{{ .fluxns }}/helm-controller
+├── Deployment/{{ .fluxns }}/kustomize-controller
+├── Deployment/{{ .fluxns }}/notification-controller
+├── Deployment/{{ .fluxns }}/source-controller
+├── Kustomization/{{ .fluxns }}/infrastructure
+│   ├── Namespace/cert-manager
+│   └── HelmRepository/cert-manager/cert-manager
+└── GitRepository/{{ .fluxns }}/flux-system
+

cmd/flux/tree.go

@@ -0,0 +1,31 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+package main
+
+import (
+	"github.com/spf13/cobra"
+)
+
+var treeCmd = &cobra.Command{
+	Use:   "tree",
+	Short: "Print the resources reconciled by Flux",
+	Long:  `The tree command shows the list of resources reconciled by a Flux object.'`,
+}
+
+func init() {
+	rootCmd.AddCommand(treeCmd)
+}

cmd/flux/tree_kustomization.go

@@ -0,0 +1,277 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+package main
+
+import (
+	"bytes"
+	"compress/gzip"
+	"context"
+	"encoding/base64"
+	"encoding/json"
+	"fmt"
+	"io"
+	"strings"
+
+	"github.com/fluxcd/flux2/internal/tree"
+	"github.com/fluxcd/flux2/internal/utils"
+	helmv2 "github.com/fluxcd/helm-controller/api/v2beta1"
+	kustomizev1 "github.com/fluxcd/kustomize-controller/api/v1beta2"
+	"github.com/fluxcd/pkg/ssa"
+	"github.com/spf13/cobra"
+	corev1 "k8s.io/api/core/v1"
+	apierrors "k8s.io/apimachinery/pkg/api/errors"
+	"k8s.io/apimachinery/pkg/runtime/schema"
+	"sigs.k8s.io/cli-utils/pkg/object"
+	"sigs.k8s.io/controller-runtime/pkg/client"
+	"sigs.k8s.io/yaml"
+)
+
+var treeKsCmd = &cobra.Command{
+	Use:     "kustomization [name]",
+	Aliases: []string{"ks", "kustomization"},
+	Short:   "Print the resource inventory of a Kustomization",
+	Long:    `The tree command prints the resource list reconciled by a Kustomization.'`,
+	Example: `  # Print the resources managed by the root Kustomization
+  flux tree kustomization flux-system
+
+  # Print the Flux resources managed by the root Kustomization
+  flux tree kustomization flux-system --compact`,
+	RunE:              treeKsCmdRun,
+	ValidArgsFunction: resourceNamesCompletionFunc(kustomizev1.GroupVersion.WithKind(kustomizev1.KustomizationKind)),
+}
+
+type TreeKsFlags struct {
+	compact bool
+	output  string
+}
+
+var treeKsArgs TreeKsFlags
+
+func init() {
+	treeKsCmd.Flags().BoolVar(&treeKsArgs.compact, "compact", false, "list Flux resources only.")
+	treeKsCmd.Flags().StringVarP(&treeKsArgs.output, "output", "o", "",
+		"the format in which the tree should be printed. can be 'json' or 'yaml'")
+	treeCmd.AddCommand(treeKsCmd)
+}
+
+func treeKsCmdRun(cmd *cobra.Command, args []string) error {
+	if len(args) < 1 {
+		return fmt.Errorf("kustomization name is required")
+	}
+	name := args[0]
+
+	ctx, cancel := context.WithTimeout(context.Background(), rootArgs.timeout)
+	defer cancel()
+
+	kubeClient, err := utils.KubeClient(rootArgs.kubeconfig, rootArgs.kubecontext)
+	if err != nil {
+		return err
+	}
+
+	k := &kustomizev1.Kustomization{}
+	err = kubeClient.Get(ctx, client.ObjectKey{
+		Namespace: rootArgs.namespace,
+		Name:      name,
+	}, k)
+	if err != nil {
+		return err
+	}
+
+	kMeta, err := object.CreateObjMetadata(k.Namespace, k.Name,
+		schema.GroupKind{Group: kustomizev1.GroupVersion.Group, Kind: kustomizev1.KustomizationKind})
+	if err != nil {
+		return err
+	}
+
+	kTree := tree.New(kMeta)
+	err = treeKustomization(ctx, kTree, k, kubeClient, treeKsArgs.compact)
+	if err != nil {
+		return err
+	}
+
+	switch treeKsArgs.output {
+	case "json":
+		data, err := json.MarshalIndent(kTree, "", "  ")
+		if err != nil {
+			return err
+		}
+		rootCmd.Println(string(data))
+	case "yaml":
+		data, err := yaml.Marshal(kTree)
+		if err != nil {
+			return err
+		}
+		rootCmd.Println(string(data))
+	default:
+		rootCmd.Println(kTree.Print())
+	}
+
+	return nil
+}
+
+func treeKustomization(ctx context.Context, tree tree.ObjMetadataTree, item *kustomizev1.Kustomization, kubeClient client.Client, compact bool) error {
+	if item.Status.Inventory == nil || len(item.Status.Inventory.Entries) == 0 {
+		return nil
+	}
+
+	compactGroup := "toolkit.fluxcd.io"
+
+	for _, entry := range item.Status.Inventory.Entries {
+		objMetadata, err := object.ParseObjMetadata(entry.ID)
+		if err != nil {
+			return err
+		}
+
+		if compact && !strings.Contains(objMetadata.GroupKind.Group, compactGroup) {
+			continue
+		}
+
+		if objMetadata.GroupKind.Group == kustomizev1.GroupVersion.Group &&
+			objMetadata.GroupKind.Kind == kustomizev1.KustomizationKind &&
+			objMetadata.Namespace == item.Namespace &&
+			objMetadata.Name == item.Name {
+			continue
+		}
+
+		ks := tree.Add(objMetadata)
+
+		if objMetadata.GroupKind.Group == helmv2.GroupVersion.Group &&
+			objMetadata.GroupKind.Kind == helmv2.HelmReleaseKind {
+			objects, err := getHelmReleaseInventory(
+				ctx, client.ObjectKey{
+					Namespace: objMetadata.Namespace,
+					Name:      objMetadata.Name,
+				}, kubeClient)
+			if err != nil {
+				return err
+			}
+
+			for _, obj := range objects {
+				if compact && !strings.Contains(obj.GroupKind.Group, compactGroup) {
+					continue
+				}
+				ks.Add(obj)
+			}
+		}
+
+		if objMetadata.GroupKind.Group == kustomizev1.GroupVersion.Group &&
+			objMetadata.GroupKind.Kind == kustomizev1.KustomizationKind &&
+			// skip kustomization if it targets a remote clusters
+			item.Spec.KubeConfig == nil {
+			k := &kustomizev1.Kustomization{}
+			err = kubeClient.Get(ctx, client.ObjectKey{
+				Namespace: objMetadata.Namespace,
+				Name:      objMetadata.Name,
+			}, k)
+			if err != nil {
+				return fmt.Errorf("failed to find object: %w", err)
+			}
+			err := treeKustomization(ctx, ks, k, kubeClient, compact)
+			if err != nil {
+				return err
+			}
+		}
+	}
+
+	return nil
+}
+
+type hrStorage struct {
+	Name     string `json:"name,omitempty"`
+	Manifest string `json:"manifest,omitempty"`
+}
+
+func getHelmReleaseInventory(ctx context.Context, objectKey client.ObjectKey, kubeClient client.Client) ([]object.ObjMetadata, error) {
+	hr := &helmv2.HelmRelease{}
+	if err := kubeClient.Get(ctx, objectKey, hr); err != nil {
+		return nil, err
+	}
+
+	// skip release if it targets a remote clusters
+	if hr.Spec.KubeConfig != nil {
+		return nil, nil
+	}
+
+	storageNamespace := hr.GetNamespace()
+	if hr.Spec.StorageNamespace != "" {
+		storageNamespace = hr.Spec.StorageNamespace
+	}
+
+	storageName := hr.GetName()
+	if hr.Spec.ReleaseName != "" {
+		storageName = hr.Spec.ReleaseName
+	} else if hr.Spec.TargetNamespace != "" {
+		storageName = strings.Join([]string{hr.Spec.TargetNamespace, hr.Name}, "-")
+	}
+
+	storageVersion := hr.Status.LastReleaseRevision
+	// skip release if it failed to install
+	if storageVersion < 1 {
+		return nil, nil
+	}
+
+	storageKey := client.ObjectKey{
+		Namespace: storageNamespace,
+		Name:      fmt.Sprintf("sh.helm.release.v1.%s.v%v", storageName, storageVersion),
+	}
+
+	storageSecret := &corev1.Secret{}
+	if err := kubeClient.Get(ctx, storageKey, storageSecret); err != nil {
+		// skip release if it has no storage
+		if apierrors.IsNotFound(err) {
+			return nil, nil
+		}
+		return nil, fmt.Errorf("failed to find the Helm storage object for HelmRelease '%s': %w", objectKey.String(), err)
+	}
+
+	releaseData, releaseFound := storageSecret.Data["release"]
+	if !releaseFound {
+		return nil, fmt.Errorf("failed to decode the Helm storage object for HelmRelease '%s'", objectKey.String())
+	}
+
+	// adapted from https://github.com/helm/helm/blob/02685e94bd3862afcb44f6cd7716dbeb69743567/pkg/storage/driver/util.go
+	var b64 = base64.StdEncoding
+	b, err := b64.DecodeString(string(releaseData))
+	if err != nil {
+		return nil, err
+	}
+	var magicGzip = []byte{0x1f, 0x8b, 0x08}
+	if bytes.Equal(b[0:3], magicGzip) {
+		r, err := gzip.NewReader(bytes.NewReader(b))
+		if err != nil {
+			return nil, err
+		}
+		defer r.Close()
+		b2, err := io.ReadAll(r)
+		if err != nil {
+			return nil, err
+		}
+		b = b2
+	}
+
+	var rls hrStorage
+	if err := json.Unmarshal(b, &rls); err != nil {
+		return nil, fmt.Errorf("failed to decode the Helm storage object for HelmRelease '%s': %w", objectKey.String(), err)
+	}
+
+	objects, err := ssa.ReadObjects(strings.NewReader(rls.Manifest))
+	if err != nil {
+		return nil, fmt.Errorf("failed to read the Helm storage object for HelmRelease '%s': %w", objectKey.String(), err)
+	}
+
+	return object.UnstructuredsToObjMetas(objects)
+}

cmd/flux/tree_kustomization_test.go

@@ -0,0 +1,64 @@
+// +build unit
+
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+package main
+
+import (
+	"testing"
+)
+
+func TestTree(t *testing.T) {
+	cases := []struct {
+		name       string
+		args       string
+		objectFile string
+		goldenFile string
+	}{
+		{
+			"tree kustomization",
+			"tree kustomization flux-system",
+			"testdata/tree/kustomizations.yaml",
+			"testdata/tree/tree.golden",
+		},
+		{
+			"tree kustomization compact",
+			"tree kustomization flux-system --compact",
+			"testdata/tree/kustomizations.yaml",
+			"testdata/tree/tree-compact.golden",
+		},
+		{
+			"tree kustomization empty",
+			"tree kustomization empty",
+			"testdata/tree/kustomizations.yaml",
+			"testdata/tree/tree-empty.golden",
+		},
+	}
+	for _, tc := range cases {
+		t.Run(tc.name, func(t *testing.T) {
+			tmpl := map[string]string{
+				"fluxns": allocateNamespace("flux-system"),
+			}
+			testEnv.CreateObjectFile(tc.objectFile, tmpl, t)
+			cmd := cmdTestCase{
+				args:   tc.args + " -n=" + tmpl["fluxns"],
+				assert: assertGoldenTemplateFile(tc.goldenFile, tmpl),
+			}
+			cmd.runTestCmd(t)
+		})
+	}
+}

cmd/flux/uninstall.go

@@ -31,6 +31,7 @@ import (
 	"sigs.k8s.io/controller-runtime/pkg/client"
 
 	"github.com/fluxcd/flux2/internal/utils"
+	"github.com/fluxcd/flux2/pkg/manifestgen"
 	helmv2 "github.com/fluxcd/helm-controller/api/v2beta1"
 	kustomizev1 "github.com/fluxcd/kustomize-controller/api/v1beta2"
 	sourcev1 "github.com/fluxcd/source-controller/api/v1beta1"
@@ -93,7 +94,7 @@ func uninstallCmdRun(cmd *cobra.Command, args []string) error {
 	uninstallFinalizers(ctx, kubeClient, uninstallArgs.dryRun)
 
 	logger.Actionf("deleting toolkit.fluxcd.io custom resource definitions")
-	uninstallCustomResourceDefinitions(ctx, kubeClient, rootArgs.namespace, uninstallArgs.dryRun)
+	uninstallCustomResourceDefinitions(ctx, kubeClient, uninstallArgs.dryRun)
 
 	if !uninstallArgs.keepNamespace {
 		uninstallNamespace(ctx, kubeClient, rootArgs.namespace, uninstallArgs.dryRun)
@@ -105,7 +106,7 @@ func uninstallCmdRun(cmd *cobra.Command, args []string) error {
 
 func uninstallComponents(ctx context.Context, kubeClient client.Client, namespace string, dryRun bool) {
 	opts, dryRunStr := getDeleteOptions(dryRun)
-	selector := client.MatchingLabels{"app.kubernetes.io/instance": namespace}
+	selector := client.MatchingLabels{manifestgen.PartOfLabelKey: manifestgen.PartOfLabelValue}
 	{
 		var list appsv1.DeploymentList
 		if err := kubeClient.List(ctx, &list, client.InNamespace(namespace), selector); err == nil {
@@ -262,9 +263,9 @@ func uninstallFinalizers(ctx context.Context, kubeClient client.Client, dryRun b
 	}
 }
 
-func uninstallCustomResourceDefinitions(ctx context.Context, kubeClient client.Client, namespace string, dryRun bool) {
+func uninstallCustomResourceDefinitions(ctx context.Context, kubeClient client.Client, dryRun bool) {
 	opts, dryRunStr := getDeleteOptions(dryRun)
-	selector := client.MatchingLabels{"app.kubernetes.io/instance": namespace}
+	selector := client.MatchingLabels{manifestgen.PartOfLabelKey: manifestgen.PartOfLabelValue}
 	{
 		var list apiextensionsv1.CustomResourceDefinitionList
 		if err := kubeClient.List(ctx, &list, selector); err == nil {

cmd/flux/version.go

@@ -28,6 +28,7 @@ import (
 	"sigs.k8s.io/yaml"
 
 	"github.com/fluxcd/flux2/internal/utils"
+	"github.com/fluxcd/flux2/pkg/manifestgen"
 )
 
 var versionCmd = &cobra.Command{
@@ -78,7 +79,7 @@ func versionCmdRun(cmd *cobra.Command, args []string) error {
 			return err
 		}
 
-		selector := client.MatchingLabels{"app.kubernetes.io/instance": rootArgs.namespace}
+		selector := client.MatchingLabels{manifestgen.PartOfLabelKey: manifestgen.PartOfLabelValue}
 		var list v1.DeploymentList
 		if err := kubeClient.List(ctx, &list, client.InNamespace(rootArgs.namespace), selector); err != nil {
 			return err

docs/internal/release.md

@@ -82,7 +82,7 @@ Flux has the following Kubernetes dependencies:
 - `k8s.io/client-go`
 - `sigs.k8s.io/controller-runtime`
 
-**Note** that all `k8s.io/*` packages must the have the same version in `go.mod` e.g.:
+**Note** that all `k8s.io/*` packages must have the same version in `go.mod` e.g.:
 
 ```
 	k8s.io/api v0.20.2
@@ -101,7 +101,7 @@ The specialised reconcilers depend on:
 **Note** that the `k8s.io/*` version must be compatible with both `kustomize/api` and `helm/v3`.
 If there is a breaking change in `client-go` we have to wait for Kustomize and Helm to upgrade first.
 
-Upgrade procedure:
+### Upgrade procedure:
 
 `fluxcd/pkg`:
 
@@ -122,10 +122,10 @@ Upgrade procedure:
 
 `fluxcd/<kustomize|helm|notification|image-automation>-controller`:
 
-1. Update the `github.com/fluxcd/source-controller/api` version in `controller/api/go.mod`  and `controller/go.mod`
-1. Update the `github.com/fluxcd/pkg/apis/meta` version in `controller/api/go.mod` and `controller/go.mod`
-1. Update the `k8s.io/*` version in `controller/api/go.mod`  and `controller/go.mod`
-1. Update the `github.com/fluxcd/pkg/runtime` version in `controller/go.mod`
+1. Update the `github.com/fluxcd/source-controller/api` version in `<NAME>-controller/api/go.mod`  and `<NAME>-controller/go.mod`
+1. Update the `github.com/fluxcd/pkg/apis/meta` version in `<NAME>-controller/api/go.mod` and `<NAME>-controller/go.mod`
+1. Update the `k8s.io/*` version in `<NAME>-controller/api/go.mod`  and `<NAME>-controller/go.mod`
+1. Update the `github.com/fluxcd/pkg/runtime` version in `<NAME>-controller/go.mod`
 1. Release the `api` package
 
 `fluxcd/flux2`:

go.mod

@@ -6,39 +6,37 @@ require (
 	github.com/Masterminds/semver/v3 v3.1.0
 	github.com/ProtonMail/go-crypto v0.0.0-20210428141323-04723f9f07d7
 	github.com/cyphar/filepath-securejoin v0.2.2
-	github.com/fluxcd/go-git-providers v0.1.1
-	github.com/fluxcd/helm-controller/api v0.12.0
-	github.com/fluxcd/image-automation-controller/api v0.15.0
-	github.com/fluxcd/image-reflector-controller/api v0.12.0
-	github.com/fluxcd/kustomize-controller/api v0.15.4
-	github.com/fluxcd/notification-controller/api v0.17.0
-	github.com/fluxcd/pkg/apis/meta v0.10.0
-	github.com/fluxcd/pkg/runtime v0.12.0
-	github.com/fluxcd/pkg/ssa v0.0.3
+	github.com/fluxcd/go-git-providers v0.4.0
+	github.com/fluxcd/helm-controller/api v0.14.0
+	github.com/fluxcd/image-automation-controller/api v0.18.0
+	github.com/fluxcd/image-reflector-controller/api v0.14.0
+	github.com/fluxcd/kustomize-controller/api v0.18.1
+	github.com/fluxcd/notification-controller/api v0.19.0
+	github.com/fluxcd/pkg/apis/meta v0.10.1
+	github.com/fluxcd/pkg/runtime v0.12.2
+	github.com/fluxcd/pkg/ssa v0.3.1
 	github.com/fluxcd/pkg/ssh v0.0.5
 	github.com/fluxcd/pkg/untar v0.0.5
 	github.com/fluxcd/pkg/version v0.0.1
-	github.com/fluxcd/source-controller/api v0.16.0
+	github.com/fluxcd/source-controller/api v0.19.0
+	github.com/go-errors/errors v1.4.0 // indirect
 	github.com/go-git/go-git/v5 v5.4.2
 	github.com/google/go-cmp v0.5.6
 	github.com/google/go-containerregistry v0.2.0
-	github.com/manifoldco/promptui v0.7.0
+	github.com/manifoldco/promptui v0.9.0
 	github.com/mattn/go-shellwords v1.0.12
 	github.com/olekukonko/tablewriter v0.0.4
 	github.com/spf13/cobra v1.1.3
 	github.com/spf13/pflag v1.0.5
 	golang.org/x/crypto v0.0.0-20210421170649-83a5a9bb288b
+	golang.org/x/term v0.0.0-20210220032956-6a3ed077a48d
 	k8s.io/api v0.22.2
 	k8s.io/apiextensions-apiserver v0.22.2
 	k8s.io/apimachinery v0.22.2
 	k8s.io/client-go v0.22.2
 	k8s.io/kubectl v0.21.1
-	sigs.k8s.io/cli-utils v0.25.1-0.20210608181808-f3974341173a
-	sigs.k8s.io/controller-runtime v0.10.1
+	sigs.k8s.io/cli-utils v0.26.0
+	sigs.k8s.io/controller-runtime v0.10.2
 	sigs.k8s.io/kustomize/api v0.8.10
 	sigs.k8s.io/yaml v1.3.0
 )
-
-// drop LGPL dependency manifoldco/promptui -> juju/ansiterm
-// undo replacement when https://github.com/manifoldco/promptui/pull/181 is merged
-replace github.com/manifoldco/promptui => github.com/nguyer/promptui v0.8.1-0.20210517132806-70ccd4709797

go.sum

@@ -29,6 +29,7 @@ github.com/Azure/azure-sdk-for-go v38.0.0+incompatible/go.mod h1:9XXNKU+eRnpl9mo
 github.com/Azure/azure-sdk-for-go v42.3.0+incompatible/go.mod h1:9XXNKU+eRnpl9moKnB4QOLf1HestfXbmab5FXxiDBjc=
 github.com/Azure/go-ansiterm v0.0.0-20170929234023-d6e3b3328b78/go.mod h1:LmzpDX56iTiv29bbRTIsUNlaFfuhWRQBWjQdVyAevI8=
 github.com/Azure/go-ansiterm v0.0.0-20210608223527-2377c96fe795/go.mod h1:LmzpDX56iTiv29bbRTIsUNlaFfuhWRQBWjQdVyAevI8=
+github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1 h1:UQHMgLO+TxOElx5B5HZ4hJQsoJ/PvUvKRhJHDQXO8P8=
 github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1/go.mod h1:xomTg63KZ2rFqZQzSB4Vz2SUXa1BpHTVz9L5PTmPC4E=
 github.com/Azure/go-autorest v14.2.0+incompatible h1:V5VMDjClD3GiElqLWO7mz2MxNAK/vTfRHdAubSIPRgs=
 github.com/Azure/go-autorest v14.2.0+incompatible/go.mod h1:r+4oMnoxhatjLLJ6zxSWATqVooLgysK6ZNox3g/xq24=
@@ -68,6 +69,7 @@ github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03
 github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=
 github.com/GoogleCloudPlatform/k8s-cloud-provider v0.0.0-20190822182118-27a4ced34534/go.mod h1:iroGtC8B3tQiqtds1l+mgk/BBOrxbqjH+eUfFQYRc14=
 github.com/Knetic/govaluate v3.0.1-0.20171022003610-9aa49832a739+incompatible/go.mod h1:r7JcOSlj0wfOMncg0iLm8Leh48TZaKVeNIfJntJ2wa0=
+github.com/MakeNowJust/heredoc v0.0.0-20170808103936-bb23615498cd h1:sjQovDkwrZp8u+gxLtPgKGjk5hCxuy2hrRejBTA9xFU=
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@@ -329,6 +334,7 @@ github.com/go-openapi/spec v0.17.0/go.mod h1:XkF/MOi14NmjsfZ8VtAKf8pIlbZzyoTvZsd
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@@ -396,6 +402,7 @@ github.com/golang/snappy v0.0.0-20180518054509-2e65f85255db/go.mod h1:/XxbfmMg8l
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@@ -410,8 +417,8 @@ github.com/google/go-cmp v0.5.6 h1:BKbKCqvP6I+rmFHt06ZmyQtvB8xAkWdhFyr0ZUNZcxQ=
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@@ -464,6 +471,7 @@ github.com/hashicorp/consul/api v1.1.0/go.mod h1:VmuI/Lkw1nC05EYQWNKwWGbkg+FbDBt
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@@ -472,7 +480,8 @@ github.com/hashicorp/go-hclog v0.9.2/go.mod h1:5CU+agLiy3J7N7QjHK5d05KxGsuXiQLrj
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@@ -544,12 +553,12 @@ github.com/kr/pty v1.1.5/go.mod h1:9r2w37qlBe7rQ6e1fg1S/9xpWHSnaqNdHD3WcMdbPDA=
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@@ -561,6 +570,8 @@ github.com/mailru/easyjson v0.0.0-20190626092158-b2ccc519800e/go.mod h1:C1wdFJiN
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@@ -582,14 +593,17 @@ github.com/mitchellh/go-homedir v1.0.0/go.mod h1:SfyaCUpYCn1Vlf4IUYiD9fPX4A5wJrk
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@@ -613,8 +627,6 @@ github.com/nats-io/nats.go v1.9.1/go.mod h1:ZjDU1L/7fJ09jvUSRVBR2e7+RnLiiIQyqyzE
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@@ -644,8 +656,6 @@ github.com/onsi/gomega v1.7.1/go.mod h1:XdKZgCCFLUoM/7CFJVPcG8C1xQ1AJ0vpAezJrB7J
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@@ -665,6 +675,7 @@ github.com/pascaldekloe/goe v0.0.0-20180627143212-57f6aae5913c/go.mod h1:lzWF7FI
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@@ -761,6 +772,7 @@ github.com/spf13/pflag v1.0.5 h1:iy+VFUOCP1a+8yFto/drg2CJ5u0yRoB7fZw3DKv/JXA=
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@@ -788,8 +800,8 @@ github.com/urfave/cli v1.22.1/go.mod h1:Gos4lmkARVdJ6EkW0WaNv/tZAAMe9V7XWyB60NtX
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@@ -852,7 +864,6 @@ go.uber.org/zap v1.10.0/go.mod h1:vwi/ZaCAaUcBkycHslxD9B2zi4UTXhF60s6SWpuDF0Q=
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@@ -917,7 +928,6 @@ golang.org/x/net v0.0.0-20180826012351-8a410e7b638d/go.mod h1:mL1N/T3taQHkDXs73r
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@@ -1045,7 +1055,6 @@ golang.org/x/sys v0.0.0-20210502180810-71e4cd670f79/go.mod h1:h1NjWce9XRLGQEsW7w
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@@ -1125,6 +1134,7 @@ golang.org/x/tools v0.0.0-20201224043029-2b0845dc783e/go.mod h1:emZCQorbCU4vsT4f
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@@ -1255,7 +1265,6 @@ gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C
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@@ -1268,44 +1277,31 @@ honnef.co/go/tools v0.0.1-2019.2.3/go.mod h1:a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt
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-k8s.io/apiserver v0.22.1/go.mod h1:2mcM6dzSt+XndzVQJX21Gx0/Klo7Aen7i0Ai6tIa400=
 k8s.io/apiserver v0.22.2/go.mod h1:vrpMmbyjWrgdyOvZTSpsusQq5iigKNWv9o9KlDAbBHI=
 k8s.io/cli-runtime v0.21.1 h1:Oj/iZxa7LLXrhzShaLNF4rFJEIEBTDHj0dJw4ra2vX4=
 k8s.io/cli-runtime v0.21.1/go.mod h1:TI9Bvl8lQWZB2KqE91QLCp9AZE4l29zNFnj/x4IX4Fw=
 k8s.io/client-go v0.18.8/go.mod h1:HqFqMllQ5NnQJNwjro9k5zMyfhZlOwpuTLVrxjkYSxU=
 k8s.io/client-go v0.21.1/go.mod h1:/kEw4RgW+3xnBGzvp9IWxKSNA+lXn3A7AuH3gdOAzLs=
-k8s.io/client-go v0.21.3/go.mod h1:+VPhCgTsaFmGILxR/7E1N0S+ryO010QBeNCv5JwRGYU=
-k8s.io/client-go v0.22.1/go.mod h1:BquC5A4UOo4qVDUtoc04/+Nxp1MeHcVc1HJm1KmG8kk=
 k8s.io/client-go v0.22.2 h1:DaSQgs02aCC1QcwUdkKZWOeaVsQjYvWv8ZazcZ6JcHc=
 k8s.io/client-go v0.22.2/go.mod h1:sAlhrkVDf50ZHx6z4K0S40wISNTarf1r800F+RlCF6U=
 k8s.io/cloud-provider v0.18.8/go.mod h1:cn9AlzMPVIXA4HHLVbgGUigaQlZyHSZ7WAwDEFNrQSs=
 k8s.io/code-generator v0.17.2/go.mod h1:DVmfPQgxQENqDIzVR2ddLXMH34qeszkKSdH/N+s+38s=
 k8s.io/code-generator v0.21.1/go.mod h1:hUlps5+9QaTrKx+jiM4rmq7YmH8wPOIko64uZCHDh6Q=
-k8s.io/code-generator v0.21.3/go.mod h1:K3y0Bv9Cz2cOW2vXUrNZlFbflhuPvuadW6JdnN6gGKo=
-k8s.io/code-generator v0.22.1/go.mod h1:eV77Y09IopzeXOJzndrDyCI88UBok2h6WxAlBwpxa+o=
 k8s.io/code-generator v0.22.2/go.mod h1:eV77Y09IopzeXOJzndrDyCI88UBok2h6WxAlBwpxa+o=
 k8s.io/component-base v0.18.8/go.mod h1:00frPRDas29rx58pPCxNkhUfPbwajlyyvu8ruNgSErU=
 k8s.io/component-base v0.21.1/go.mod h1:NgzFZ2qu4m1juby4TnrmpR8adRk6ka62YdH5DkIIyKA=
-k8s.io/component-base v0.21.3/go.mod h1:kkuhtfEHeZM6LkX0saqSK8PbdO7A0HigUngmhhrwfGQ=
-k8s.io/component-base v0.22.1/go.mod h1:0D+Bl8rrnsPN9v0dyYvkqFfBeAd4u7n77ze+p8CMiPo=
 k8s.io/component-base v0.22.2 h1:vNIvE0AIrLhjX8drH0BgCNJcR4QZxMXcJzBsDplDx9M=
 k8s.io/component-base v0.22.2/go.mod h1:5Br2QhI9OTe79p+TzPe9JKNQYvEKbq9rTJDWllunGug=
 k8s.io/component-helpers v0.21.1/go.mod h1:FtC1flbiQlosHQrLrRUulnKxE4ajgWCGy/67fT2GRlQ=
@@ -1335,9 +1331,6 @@ k8s.io/metrics v0.21.1/go.mod h1:pyDVLsLe++FIGDBFU80NcW4xMFsuiVTWL8Zfi7+PpNo=
 k8s.io/utils v0.0.0-20200324210504-a9aa75ae1b89/go.mod h1:sZAwmy6armz5eXlNoLmJcl4F1QuKu7sr+mFQ0byX7Ew=
 k8s.io/utils v0.0.0-20201110183641-67b214c5f920/go.mod h1:jPW/WVKK9YHAvNhRxK0md/EJ228hCsBRufyofKtW8HA=
 k8s.io/utils v0.0.0-20210517184530-5a248b5acedc/go.mod h1:jPW/WVKK9YHAvNhRxK0md/EJ228hCsBRufyofKtW8HA=
-k8s.io/utils v0.0.0-20210527160623-6fdb442a123b/go.mod h1:jPW/WVKK9YHAvNhRxK0md/EJ228hCsBRufyofKtW8HA=
-k8s.io/utils v0.0.0-20210707171843-4b05e18ac7d9/go.mod h1:jPW/WVKK9YHAvNhRxK0md/EJ228hCsBRufyofKtW8HA=
-k8s.io/utils v0.0.0-20210722164352-7f3ee0f31471/go.mod h1:jPW/WVKK9YHAvNhRxK0md/EJ228hCsBRufyofKtW8HA=
 k8s.io/utils v0.0.0-20210819203725-bdf08cb9a70a h1:8dYfu/Fc9Gz2rNJKB9IQRGgQOh2clmRzNIPPY1xLY5g=
 k8s.io/utils v0.0.0-20210819203725-bdf08cb9a70a/go.mod h1:jPW/WVKK9YHAvNhRxK0md/EJ228hCsBRufyofKtW8HA=
 modernc.org/cc v1.0.0/go.mod h1:1Sk4//wdnYJiUIxnW8ddKpaOJCF37yAdqYnkxUpaYxw=
@@ -1350,15 +1343,13 @@ rsc.io/quote/v3 v3.1.0/go.mod h1:yEA65RcK8LyAZtP9Kv3t0HmxON59tX3rD+tICJqUlj0=
 rsc.io/sampler v1.3.0/go.mod h1:T1hPZKmBbMNahiBKFy5HrXp6adAjACjK9JXDnKaTXpA=
 sigs.k8s.io/apiserver-network-proxy/konnectivity-client v0.0.7/go.mod h1:PHgbrJT7lCHcxMU+mDHEm+nx46H4zuuHZkDP6icnhu0=
 sigs.k8s.io/apiserver-network-proxy/konnectivity-client v0.0.15/go.mod h1:LEScyzhFmoF5pso/YSeBstl57mOzx9xlU9n85RGrDQg=
-sigs.k8s.io/apiserver-network-proxy/konnectivity-client v0.0.19/go.mod h1:LEScyzhFmoF5pso/YSeBstl57mOzx9xlU9n85RGrDQg=
 sigs.k8s.io/apiserver-network-proxy/konnectivity-client v0.0.22/go.mod h1:LEScyzhFmoF5pso/YSeBstl57mOzx9xlU9n85RGrDQg=
-sigs.k8s.io/cli-utils v0.25.1-0.20210608181808-f3974341173a h1:S17+FPWGsOonXim+GcadLcSblEwL131Y9fKLfifSYkY=
-sigs.k8s.io/cli-utils v0.25.1-0.20210608181808-f3974341173a/go.mod h1:I4jgHr6uRfX0CkOMECwSgg2J48rNzZE1+kDXj9SnJBc=
+sigs.k8s.io/cli-utils v0.26.0 h1:N1X1NVN19+daTihVimkSVNMgiVPIHG9OO3SJPh6SBQI=
+sigs.k8s.io/cli-utils v0.26.0/go.mod h1:myCFn83XMe7vC1ZX5CEJJIY2cqsl6IxYI727mLW1mfE=
 sigs.k8s.io/controller-runtime v0.9.0-beta.5.0.20210524185538-7181f1162e79/go.mod h1:rgf+cBz72pYlKXDRNhI1WFQv/S86EMUV4/ySmsEYgHk=
-sigs.k8s.io/controller-runtime v0.9.0/go.mod h1:TgkfvrhhEw3PlI0BRL/5xM+89y3/yc0ZDfdbTl84si8=
-sigs.k8s.io/controller-runtime v0.9.5/go.mod h1:q6PpkM5vqQubEKUKOM6qr06oXGzOBcCby1DA9FbyZeA=
-sigs.k8s.io/controller-runtime v0.10.1 h1:+eLHgY/VrJWnfg6iXUqhCUqNXgPH1NZeP9drNAAgWlg=
 sigs.k8s.io/controller-runtime v0.10.1/go.mod h1:CQp8eyUQZ/Q7PJvnIrB6/hgfTC1kBkGylwsLgOQi1WY=
+sigs.k8s.io/controller-runtime v0.10.2 h1:jW8qiY+yMnnPx6O9hu63tgcwaKzd1yLYui+mpvClOOc=
+sigs.k8s.io/controller-runtime v0.10.2/go.mod h1:CQp8eyUQZ/Q7PJvnIrB6/hgfTC1kBkGylwsLgOQi1WY=
 sigs.k8s.io/kustomize/api v0.8.8/go.mod h1:He1zoK0nk43Pc6NlV085xDXDXTNprtcyKZVm3swsdNY=
 sigs.k8s.io/kustomize/api v0.8.10 h1:CqbdK/qT7JE+uVETkrVMk7pQf0fPFXk9+QQ//Q7sAtc=
 sigs.k8s.io/kustomize/api v0.8.10/go.mod h1:ImeIkhUU7GIhamOtKPlkllt+fkBKL5f6/4NLhVwkinA=

internal/bootstrap/bootstrap.go

@@ -159,6 +159,10 @@ func kustomizationPathDiffers(ctx context.Context, kube client.Client, objKey cl
 		return "", err
 	}
 	normalizePath := func(p string) string {
+		// remove the trailing '/' if the path is not './'
+		if len(p) > 2 {
+			p = strings.TrimSuffix(p, "/")
+		}
 		return fmt.Sprintf("./%s", strings.TrimPrefix(p, "./"))
 	}
 	if normalizePath(path) == normalizePath(k.Spec.Path) {

internal/bootstrap/bootstrap_plain_git.go

@@ -75,16 +75,6 @@ func WithRepositoryURL(url string) GitOption {
 	return repositoryURLOption(url)
 }
 
-func WithCABundle(b []byte) GitOption {
-	return caBundleOption(b)
-}
-
-type caBundleOption []byte
-
-func (o caBundleOption) applyGit(b *PlainGitBootstrapper) {
-	b.caBundle = o
-}
-
 type repositoryURLOption string
 
 func (o repositoryURLOption) applyGit(b *PlainGitBootstrapper) {
@@ -347,7 +337,7 @@ func (b *PlainGitBootstrapper) ReportComponentsHealth(ctx context.Context, insta
 		return err
 	}
 
-	checker, err := status.NewStatusChecker(cfg, 2*time.Second, timeout, b.logger)
+	checker, err := status.NewStatusChecker(cfg, 5*time.Second, timeout, b.logger)
 	if err != nil {
 		return err
 	}

internal/bootstrap/bootstrap_provider.go

@@ -30,6 +30,7 @@ import (
 	"github.com/fluxcd/go-git-providers/gitprovider"
 
 	"github.com/fluxcd/flux2/internal/bootstrap/git"
+	"github.com/fluxcd/flux2/internal/bootstrap/provider"
 	"github.com/fluxcd/flux2/pkg/manifestgen/sourcesecret"
 	"github.com/fluxcd/flux2/pkg/manifestgen/sync"
 )
@@ -37,9 +38,11 @@ import (
 type GitProviderBootstrapper struct {
 	*PlainGitBootstrapper
 
-	owner      string
-	repository string
-	personal   bool
+	owner          string
+	repositoryName string
+	repository     gitprovider.UserRepository
+
+	personal bool
 
 	description   string
 	defaultBranch string
@@ -80,23 +83,23 @@ type GitProviderOption interface {
 	applyGitProvider(b *GitProviderBootstrapper)
 }
 
-func WithProviderRepository(owner, repository string, personal bool) GitProviderOption {
+func WithProviderRepository(owner, repositoryName string, personal bool) GitProviderOption {
 	return providerRepositoryOption{
-		owner:      owner,
-		repository: repository,
-		personal:   personal,
+		owner:          owner,
+		repositoryName: repositoryName,
+		personal:       personal,
 	}
 }
 
 type providerRepositoryOption struct {
-	owner      string
-	repository string
-	personal   bool
+	owner          string
+	repositoryName string
+	personal       bool
 }
 
 func (o providerRepositoryOption) applyGitProvider(b *GitProviderBootstrapper) {
 	b.owner = o.owner
-	b.repository = o.repository
+	b.repositoryName = o.repositoryName
 	b.personal = o.personal
 }
 
@@ -181,19 +184,19 @@ func (o reconcileOption) applyGitProvider(b *GitProviderBootstrapper) {
 }
 
 func (b *GitProviderBootstrapper) ReconcileSyncConfig(ctx context.Context, options sync.Options) error {
-	repo, err := b.getRepository(ctx)
-	if err != nil {
-		return err
+	if b.repository == nil {
+		return errors.New("repository is required")
 	}
+
 	if b.url == "" {
-		bootstrapURL, err := b.getCloneURL(repo, gitprovider.TransportType(b.bootstrapTransportType))
+		bootstrapURL, err := b.getCloneURL(b.repository, gitprovider.TransportType(b.bootstrapTransportType))
 		if err != nil {
 			return err
 		}
 		WithRepositoryURL(bootstrapURL).applyGit(b.PlainGitBootstrapper)
 	}
 	if options.URL == "" {
-		syncURL, err := b.getCloneURL(repo, gitprovider.TransportType(b.syncTransportType))
+		syncURL, err := b.getCloneURL(b.repository, gitprovider.TransportType(b.syncTransportType))
 		if err != nil {
 			return err
 		}
@@ -211,7 +214,6 @@ func (b *GitProviderBootstrapper) ReconcileSyncConfig(ctx context.Context, optio
 func (b *GitProviderBootstrapper) ReconcileRepository(ctx context.Context) error {
 	var repo gitprovider.UserRepository
 	var err error
-
 	if b.personal {
 		repo, err = b.reconcileUserRepository(ctx)
 	} else {
@@ -221,36 +223,37 @@ func (b *GitProviderBootstrapper) ReconcileRepository(ctx context.Context) error
 		return err
 	}
 
-	cloneURL := repo.Repository().GetCloneURL(gitprovider.TransportType(b.bootstrapTransportType))
-	// TODO(hidde): https://github.com/fluxcd/go-git-providers/issues/55
-	if strings.HasPrefix(cloneURL, "https://https://") {
-		cloneURL = strings.TrimPrefix(cloneURL, "https://")
+	cloneURL, err := b.getCloneURL(repo, gitprovider.TransportType(b.bootstrapTransportType))
+	if err != nil {
+		return err
 	}
+
+	b.repository = repo
 	WithRepositoryURL(cloneURL).applyGit(b.PlainGitBootstrapper)
 
 	return err
 }
 
 func (b *GitProviderBootstrapper) reconcileDeployKey(ctx context.Context, secret corev1.Secret, options sourcesecret.Options) error {
+	if b.repository == nil {
+		return errors.New("repository is required")
+	}
+
 	ppk, ok := secret.StringData[sourcesecret.PublicKeySecretKey]
 	if !ok {
 		return nil
 	}
 	b.logger.Successf("public key: %s", strings.TrimSpace(ppk))
 
-	repo, err := b.getRepository(ctx)
+	name := deployKeyName(options.Namespace, b.branch, options.Name, options.TargetPath)
+	deployKeyInfo := newDeployKeyInfo(name, ppk, b.readWriteKey)
+
+	_, changed, err := b.repository.DeployKeys().Reconcile(ctx, deployKeyInfo)
 	if err != nil {
 		return err
 	}
-
-	name := deployKeyName(options.Namespace, b.branch, options.Name, options.TargetPath)
-	deployKeyInfo := newDeployKeyInfo(name, ppk, b.readWriteKey)
-	var changed bool
-	if _, changed, err = repo.DeployKeys().Reconcile(ctx, deployKeyInfo); err != nil {
-		return err
-	}
 	if changed {
-		b.logger.Successf("configured deploy key %q for %q", deployKeyInfo.Name, repo.Repository().String())
+		b.logger.Successf("configured deploy key %q for %q", deployKeyInfo.Name, b.repository.Repository().String())
 	}
 	return nil
 }
@@ -267,9 +270,12 @@ func (b *GitProviderBootstrapper) reconcileOrgRepository(ctx context.Context) (g
 
 	// Construct the repository and other configuration objects
 	// go-git-provider likes to work with
-	subOrgs, repoName := splitSubOrganizationsFromRepositoryName(b.repository)
-	orgRef := newOrganizationRef(b.provider.SupportedDomain(), b.owner, subOrgs)
-	repoRef := newOrgRepositoryRef(orgRef, repoName)
+	subOrgs, repoName := splitSubOrganizationsFromRepositoryName(b.repositoryName)
+	orgRef, err := b.getOrganization(ctx, subOrgs)
+	if err != nil {
+		return nil, fmt.Errorf("failed to create new Git repository for the organization %q: %w", orgRef.String(), err)
+	}
+	repoRef := newOrgRepositoryRef(*orgRef, repoName)
 	repoInfo := newRepositoryInfo(b.description, b.defaultBranch, b.visibility)
 
 	// Reconcile the organization repository
@@ -343,7 +349,7 @@ func (b *GitProviderBootstrapper) reconcileUserRepository(ctx context.Context) (
 
 	// Construct the repository and other metadata objects
 	// go-git-provider likes to work with.
-	_, repoName := splitSubOrganizationsFromRepositoryName(b.repository)
+	_, repoName := splitSubOrganizationsFromRepositoryName(b.repositoryName)
 	userRef := newUserRef(b.provider.SupportedDomain(), b.owner)
 	repoRef := newUserRepositoryRef(userRef, repoName)
 	repoInfo := newRepositoryInfo(b.description, b.defaultBranch, b.visibility)
@@ -383,21 +389,22 @@ func (b *GitProviderBootstrapper) reconcileUserRepository(ctx context.Context) (
 	return repo, nil
 }
 
-// getRepository retrieves and returns the gitprovider.UserRepository
-// for organization and user repositories using the
-// GitProviderBootstrapper values.
-// As gitprovider.OrgRepository is a superset of gitprovider.UserRepository, this
-// type is returned.
-func (b *GitProviderBootstrapper) getRepository(ctx context.Context) (gitprovider.UserRepository, error) {
-	subOrgs, repoName := splitSubOrganizationsFromRepositoryName(b.repository)
-
-	if b.personal {
-		userRef := newUserRef(b.provider.SupportedDomain(), b.owner)
-		return b.provider.UserRepositories().Get(ctx, newUserRepositoryRef(userRef, repoName))
-	}
-
+// getOrganization retrieves and returns the gitprovider.Organization
+// using the GitProviderBootstrapper values.
+func (b *GitProviderBootstrapper) getOrganization(ctx context.Context, subOrgs []string) (*gitprovider.OrganizationRef, error) {
 	orgRef := newOrganizationRef(b.provider.SupportedDomain(), b.owner, subOrgs)
-	return b.provider.OrgRepositories().Get(ctx, newOrgRepositoryRef(orgRef, repoName))
+	// With Stash get the organization to be sure to get the correct key
+	if string(b.provider.ProviderID()) == string(provider.GitProviderStash) {
+		org, err := b.provider.Organizations().Get(ctx, orgRef)
+		if err != nil {
+			return nil, fmt.Errorf("failed to get Git organization: %w", err)
+		}
+
+		orgRef = org.Organization()
+
+		return &orgRef, nil
+	}
+	return &orgRef, nil
 }
 
 // getCloneURL returns the Git clone URL for the given
@@ -405,18 +412,23 @@ func (b *GitProviderBootstrapper) getRepository(ctx context.Context) (gitprovide
 // gitprovider.TransportTypeSSH and a custom SSH hostname is configured,
 // the hostname of the URL will be modified to this hostname.
 func (b *GitProviderBootstrapper) getCloneURL(repository gitprovider.UserRepository, transport gitprovider.TransportType) (string, error) {
-	u := repository.Repository().GetCloneURL(transport)
+	var url string
+	if cloner, ok := repository.(gitprovider.CloneableURL); ok {
+		return cloner.GetCloneURL("", transport), nil
+	}
+
+	url = repository.Repository().GetCloneURL(transport)
 	// TODO(hidde): https://github.com/fluxcd/go-git-providers/issues/55
-	if strings.HasPrefix(u, "https://https://") {
-		u = strings.TrimPrefix(u, "https://")
+	if strings.HasPrefix(url, "https://https://") {
+		url = strings.TrimPrefix(url, "https://")
 	}
 	var err error
 	if transport == gitprovider.TransportTypeSSH && b.sshHostname != "" {
-		if u, err = setHostname(u, b.sshHostname); err != nil {
-			err = fmt.Errorf("failed to set SSH hostname for URL %q: %w", u, err)
+		if url, err = setHostname(url, b.sshHostname); err != nil {
+			err = fmt.Errorf("failed to set SSH hostname for URL %q: %w", url, err)
 		}
 	}
-	return u, err
+	return url, err
 }
 
 // splitSubOrganizationsFromRepositoryName removes any prefixed sub

internal/bootstrap/options.go

@@ -62,6 +62,20 @@ func (o authorOption) applyGitProvider(b *GitProviderBootstrapper) {
 	o.applyGit(b.PlainGitBootstrapper)
 }
 
+func WithCABundle(b []byte) Option {
+	return caBundleOption(b)
+}
+
+type caBundleOption []byte
+
+func (o caBundleOption) applyGit(b *PlainGitBootstrapper) {
+	b.caBundle = o
+}
+
+func (o caBundleOption) applyGitProvider(b *GitProviderBootstrapper) {
+	b.caBundle = o
+}
+
 func WithCommitMessageAppendix(appendix string) Option {
 	return commitMessageAppendixOption(appendix)
 }

internal/bootstrap/provider/factory.go

@@ -22,6 +22,7 @@ import (
 	"github.com/fluxcd/go-git-providers/github"
 	"github.com/fluxcd/go-git-providers/gitlab"
 	"github.com/fluxcd/go-git-providers/gitprovider"
+	"github.com/fluxcd/go-git-providers/stash"
 )
 
 // BuildGitProvider builds a gitprovider.Client for the provided
@@ -32,25 +33,42 @@ func BuildGitProvider(config Config) (gitprovider.Client, error) {
 	var err error
 	switch config.Provider {
 	case GitProviderGitHub:
-		opts := []github.ClientOption{
-			github.WithOAuth2Token(config.Token),
+		opts := []gitprovider.ClientOption{
+			gitprovider.WithOAuth2Token(config.Token),
 		}
 		if config.Hostname != "" {
-			opts = append(opts, github.WithDomain(config.Hostname))
+			opts = append(opts, gitprovider.WithDomain(config.Hostname))
+		}
+		if config.CaBundle != nil {
+			opts = append(opts, gitprovider.WithCustomCAPostChainTransportHook(config.CaBundle))
 		}
 		if client, err = github.NewClient(opts...); err != nil {
 			return nil, err
 		}
 	case GitProviderGitLab:
-		opts := []gitlab.ClientOption{
-			gitlab.WithConditionalRequests(true),
+		opts := []gitprovider.ClientOption{
+			gitprovider.WithConditionalRequests(true),
 		}
 		if config.Hostname != "" {
-			opts = append(opts, gitlab.WithDomain(config.Hostname))
+			opts = append(opts, gitprovider.WithDomain(config.Hostname))
+		}
+		if config.CaBundle != nil {
+			opts = append(opts, gitprovider.WithCustomCAPostChainTransportHook(config.CaBundle))
 		}
 		if client, err = gitlab.NewClient(config.Token, "", opts...); err != nil {
 			return nil, err
 		}
+	case GitProviderStash:
+		opts := []gitprovider.ClientOption{}
+		if config.Hostname != "" {
+			opts = append(opts, gitprovider.WithDomain(config.Hostname))
+		}
+		if config.CaBundle != nil {
+			opts = append(opts, gitprovider.WithCustomCAPostChainTransportHook(config.CaBundle))
+		}
+		if client, err = stash.NewStashClient(config.Username, config.Token, opts...); err != nil {
+			return nil, err
+		}
 	default:
 		return nil, fmt.Errorf("unsupported Git provider '%s'", config.Provider)
 	}

internal/bootstrap/provider/provider.go

@@ -22,6 +22,7 @@ type GitProvider string
 const (
 	GitProviderGitHub GitProvider = "github"
 	GitProviderGitLab GitProvider = "gitlab"
+	GitProviderStash  GitProvider = "stash"
 )
 
 // Config defines the configuration for connecting to a GitProvider.
@@ -33,7 +34,14 @@ type Config struct {
 	// e.g. github.example.com.
 	Hostname string
 
+	// Username contains the username used to authenticate with
+	// the Provider.
+	Username string
+
 	// Token contains the token used to authenticate with the
 	// Provider.
 	Token string
+
+	// CABunle contains the CA bundle to use for the client.
+	CaBundle []byte
 }

internal/tree/tree.go

@@ -0,0 +1,141 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+Derived work from https://github.com/d6o/GoTree
+Copyright (c) 2017 Diego Siqueira
+*/
+
+package tree
+
+import (
+	"strings"
+
+	"github.com/fluxcd/pkg/ssa"
+	"sigs.k8s.io/cli-utils/pkg/object"
+)
+
+const (
+	newLine      = "\n"
+	emptySpace   = "    "
+	middleItem   = "├── "
+	continueItem = "│   "
+	lastItem     = "└── "
+)
+
+type (
+	objMetadataTree struct {
+		Resource     object.ObjMetadata `json:"resource"`
+		ResourceTree []ObjMetadataTree  `json:"resources,omitempty"`
+	}
+
+	ObjMetadataTree interface {
+		Add(objMetadata object.ObjMetadata) ObjMetadataTree
+		AddTree(tree ObjMetadataTree)
+		Items() []ObjMetadataTree
+		Text() string
+		Print() string
+	}
+
+	printer struct {
+	}
+
+	Printer interface {
+		Print(ObjMetadataTree) string
+	}
+)
+
+func New(objMetadata object.ObjMetadata) ObjMetadataTree {
+	return &objMetadataTree{
+		Resource:     objMetadata,
+		ResourceTree: []ObjMetadataTree{},
+	}
+}
+
+func (t *objMetadataTree) Add(objMetadata object.ObjMetadata) ObjMetadataTree {
+	n := New(objMetadata)
+	t.ResourceTree = append(t.ResourceTree, n)
+	return n
+}
+
+func (t *objMetadataTree) AddTree(tree ObjMetadataTree) {
+	t.ResourceTree = append(t.ResourceTree, tree)
+}
+
+func (t *objMetadataTree) Text() string {
+	return ssa.FmtObjMetadata(t.Resource)
+}
+
+func (t *objMetadataTree) Items() []ObjMetadataTree {
+	return t.ResourceTree
+}
+
+func (t *objMetadataTree) Print() string {
+	return newPrinter().Print(t)
+}
+
+func newPrinter() Printer {
+	return &printer{}
+}
+
+func (p *printer) Print(t ObjMetadataTree) string {
+	return t.Text() + newLine + p.printItems(t.Items(), []bool{})
+}
+
+func (p *printer) printText(text string, spaces []bool, last bool) string {
+	var result string
+	for _, space := range spaces {
+		if space {
+			result += emptySpace
+		} else {
+			result += continueItem
+		}
+	}
+
+	indicator := middleItem
+	if last {
+		indicator = lastItem
+	}
+
+	var out string
+	lines := strings.Split(text, "\n")
+	for i := range lines {
+		text := lines[i]
+		if i == 0 {
+			out += result + indicator + text + newLine
+			continue
+		}
+		if last {
+			indicator = emptySpace
+		} else {
+			indicator = continueItem
+		}
+		out += result + indicator + text + newLine
+	}
+
+	return out
+}
+
+func (p *printer) printItems(t []ObjMetadataTree, spaces []bool) string {
+	var result string
+	for i, f := range t {
+		last := i == len(t)-1
+		result += p.printText(f.Text(), spaces, last)
+		if len(f.Items()) > 0 {
+			spacesChild := append(spaces, last)
+			result += p.printItems(f.Items(), spacesChild)
+		}
+	}
+	return result
+}

internal/utils/apply.go

@@ -1,3 +1,19 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
 package utils
 
 import (
@@ -7,7 +23,6 @@ import (
 	"fmt"
 	"os"
 	"path/filepath"
-	"time"
 
 	"github.com/fluxcd/pkg/ssa"
 	"k8s.io/apimachinery/pkg/apis/meta/v1/unstructured"
@@ -54,7 +69,7 @@ func Apply(ctx context.Context, kubeConfigPath string, kubeContext string, manif
 		return "", err
 	}
 
-	changeSet, err := resourceManager.ApplyAllStaged(ctx, objs, false, time.Minute)
+	changeSet, err := resourceManager.ApplyAllStaged(ctx, objs, ssa.DefaultApplyOptions())
 	if err != nil {
 		return "", err
 	}

manifests/bases/helm-controller/kustomization.yaml

@@ -1,8 +1,8 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- https://github.com/fluxcd/helm-controller/releases/download/v0.12.0/helm-controller.crds.yaml
-- https://github.com/fluxcd/helm-controller/releases/download/v0.12.0/helm-controller.deployment.yaml
+- https://github.com/fluxcd/helm-controller/releases/download/v0.14.0/helm-controller.crds.yaml
+- https://github.com/fluxcd/helm-controller/releases/download/v0.14.0/helm-controller.deployment.yaml
 - account.yaml
 patchesJson6902:
 - target:

manifests/bases/image-automation-controller/kustomization.yaml

@@ -1,8 +1,8 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- https://github.com/fluxcd/image-automation-controller/releases/download/v0.15.0/image-automation-controller.crds.yaml
-- https://github.com/fluxcd/image-automation-controller/releases/download/v0.15.0/image-automation-controller.deployment.yaml
+- https://github.com/fluxcd/image-automation-controller/releases/download/v0.18.0/image-automation-controller.crds.yaml
+- https://github.com/fluxcd/image-automation-controller/releases/download/v0.18.0/image-automation-controller.deployment.yaml
 - account.yaml
 patchesJson6902:
 - target:

manifests/bases/image-reflector-controller/kustomization.yaml

@@ -1,8 +1,8 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- https://github.com/fluxcd/image-reflector-controller/releases/download/v0.12.0/image-reflector-controller.crds.yaml
-- https://github.com/fluxcd/image-reflector-controller/releases/download/v0.12.0/image-reflector-controller.deployment.yaml
+- https://github.com/fluxcd/image-reflector-controller/releases/download/v0.14.0/image-reflector-controller.crds.yaml
+- https://github.com/fluxcd/image-reflector-controller/releases/download/v0.14.0/image-reflector-controller.deployment.yaml
 - account.yaml
 patchesJson6902:
 - target:

manifests/bases/kustomize-controller/kustomization.yaml

@@ -1,8 +1,8 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- https://github.com/fluxcd/kustomize-controller/releases/download/v0.15.4/kustomize-controller.crds.yaml
-- https://github.com/fluxcd/kustomize-controller/releases/download/v0.15.4/kustomize-controller.deployment.yaml
+- https://github.com/fluxcd/kustomize-controller/releases/download/v0.18.1/kustomize-controller.crds.yaml
+- https://github.com/fluxcd/kustomize-controller/releases/download/v0.18.1/kustomize-controller.deployment.yaml
 - account.yaml
 patchesJson6902:
 - target:

manifests/bases/notification-controller/kustomization.yaml

@@ -1,8 +1,8 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- https://github.com/fluxcd/notification-controller/releases/download/v0.17.0/notification-controller.crds.yaml
-- https://github.com/fluxcd/notification-controller/releases/download/v0.17.0/notification-controller.deployment.yaml
+- https://github.com/fluxcd/notification-controller/releases/download/v0.19.0/notification-controller.crds.yaml
+- https://github.com/fluxcd/notification-controller/releases/download/v0.19.0/notification-controller.deployment.yaml
 - account.yaml
 patchesJson6902:
   - target:

manifests/bases/source-controller/kustomization.yaml

@@ -1,8 +1,8 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- https://github.com/fluxcd/source-controller/releases/download/v0.16.0/source-controller.crds.yaml
-- https://github.com/fluxcd/source-controller/releases/download/v0.16.0/source-controller.deployment.yaml
+- https://github.com/fluxcd/source-controller/releases/download/v0.19.0/source-controller.crds.yaml
+- https://github.com/fluxcd/source-controller/releases/download/v0.19.0/source-controller.deployment.yaml
 - account.yaml
 patchesJson6902:
 - target:

manifests/crds/kustomization.yaml

@@ -1,9 +1,9 @@
 apiVersion: kustomize.config.k8s.io/v1beta1
 kind: Kustomization
 resources:
-- https://github.com/fluxcd/source-controller/releases/download/v0.16.0/source-controller.crds.yaml
-- https://github.com/fluxcd/kustomize-controller/releases/download/v0.15.4/kustomize-controller.crds.yaml
-- https://github.com/fluxcd/helm-controller/releases/download/v0.12.0/helm-controller.crds.yaml
-- https://github.com/fluxcd/notification-controller/releases/download/v0.17.0/notification-controller.crds.yaml
-- https://github.com/fluxcd/image-reflector-controller/releases/download/v0.12.0/image-reflector-controller.crds.yaml
-- https://github.com/fluxcd/image-automation-controller/releases/download/v0.15.0/image-automation-controller.crds.yaml
+- https://github.com/fluxcd/source-controller/releases/download/v0.19.0/source-controller.crds.yaml
+- https://github.com/fluxcd/kustomize-controller/releases/download/v0.18.1/kustomize-controller.crds.yaml
+- https://github.com/fluxcd/helm-controller/releases/download/v0.14.0/helm-controller.crds.yaml
+- https://github.com/fluxcd/notification-controller/releases/download/v0.19.0/notification-controller.crds.yaml
+- https://github.com/fluxcd/image-reflector-controller/releases/download/v0.14.0/image-reflector-controller.crds.yaml
+- https://github.com/fluxcd/image-automation-controller/releases/download/v0.18.0/image-automation-controller.crds.yaml

manifests/install/labels.yaml

@@ -3,6 +3,7 @@ kind: LabelTransformer
 metadata:
   name: labels
 labels:
+  app.kubernetes.io/part-of: flux
   app.kubernetes.io/instance: flux-system
 fieldSpecs:
   - path: metadata/labels

manifests/integrations/eventhub-credentials-sync/_base/sync.yaml

@@ -50,16 +50,16 @@ spec:
               $(RECONCILE_SH)
 
               apply-secret() {
-                /kbin/kubectl create secret generic "${1}" \
-                  --from-literal=token="${2}" \
-                  --from-literal=address="${3}" \
+                /kbin/kubectl create secret generic "$1" \
+                  --from-literal=token="$2" \
+                  --from-literal=address="$3" \
                   --dry-run=client -o=yaml \
                   | grep -v "creationTimestamp:" \
                   | /kbin/kubectl apply -f -
               }
 
               pause_loop() {
-                sleep "${SYNC_PERIOD:-3600}" || true
+                sleep "$SYNC_PERIOD" || true
               }
 
               graceful_exit() {
@@ -71,8 +71,8 @@ spec:
                     | tr [ %
                   )"
                 # shellcheck disable=SC2086
-                if [ "${job_ids}" ]; then
-                  kill ${job_ids}
+                if [ "$job_ids" ]; then
+                  kill $job_ids
                 fi
                 wait
                 echo "Graceful exit -- $(date)"
@@ -80,7 +80,7 @@ spec:
 
               trap graceful_exit INT TERM
 
-              echo "Loop started (period: ${SYNC_PERIOD} s) -- $(date)"
+              echo "Loop started (period: $SYNC_PERIOD s) -- $(date)"
               while true; do
                 reconcile & wait $!
                 pause_loop & wait $!

manifests/integrations/eventhub-credentials-sync/_cronjobs/_base/sync.yaml

@@ -52,9 +52,9 @@ spec:
                   $(RECONCILE_SH)
 
                   apply-secret() {
-                    /kbin/kubectl create secret generic "${1}" \
-                      --from-literal=token="${2}" \
-                      --from-literal=address="${3}" \
+                    /kbin/kubectl create secret generic "$1" \
+                      --from-literal=token="$2" \
+                      --from-literal=address="$3" \
                       --dry-run=client -o=yaml \
                       | grep -v "creationTimestamp:" \
                       | /kbin/kubectl apply -f -

manifests/integrations/registry-credentials-sync/_base/sync.yaml

@@ -46,17 +46,17 @@ spec:
           $(RECONCILE_SH)
 
           apply-secret() {
-            /kbin/kubectl create secret docker-registry "${1}" \
-              --docker-password="${2}" \
-              --docker-username="${3}" \
-              --docker-server="${4}" \
+            /kbin/kubectl create secret docker-registry "$1" \
+              --docker-password="$2" \
+              --docker-username="$3" \
+              --docker-server="$4" \
               --dry-run=client -o=yaml \
               | grep -v "creationTimestamp:" \
               | /kbin/kubectl apply -f -
           }
 
           pause_loop() {
-            sleep "${SYNC_PERIOD:-3600}" || true
+            sleep "$SYNC_PERIOD" || true
           }
 
           graceful_exit() {
@@ -68,8 +68,8 @@ spec:
                 | tr [ %
               )"
             # shellcheck disable=SC2086
-            if [ "${job_ids}" ]; then
-              kill ${job_ids}
+            if [ "$job_ids" ]; then
+              kill $job_ids
             fi
             wait
             echo "Graceful exit -- $(date)"
@@ -77,7 +77,7 @@ spec:
 
           trap graceful_exit INT TERM
 
-          echo "Loop started (period: ${SYNC_PERIOD} s) -- $(date)"
+          echo "Loop started (period: $SYNC_PERIOD s) -- $(date)"
           while true; do
             reconcile & wait $!
             pause_loop & wait $!

manifests/integrations/registry-credentials-sync/_cronjobs/_base/sync.yaml

@@ -48,10 +48,10 @@ spec:
               $(RECONCILE_SH)
 
               apply-secret() {
-                /kbin/kubectl create secret docker-registry "${1}" \
-                  --docker-password="${2}" \
-                  --docker-username="${3}" \
-                  --docker-server="${4}" \
+                /kbin/kubectl create secret docker-registry "$1" \
+                  --docker-password="$2" \
+                  --docker-username="$3" \
+                  --docker-server="$4" \
                   --dry-run=client -o=yaml \
                   | grep -v "creationTimestamp:" \
                   | /kbin/kubectl apply -f -

manifests/monitoring/grafana/dashboards/cluster.json

@@ -15,7 +15,7 @@
   "editable": true,
   "gnetId": null,
   "graphTooltip": 0,
-  "iteration": 1602679512025,
+  "iteration": 1636369574387,
   "links": [],
   "panels": [
     {
@@ -23,7 +23,6 @@
       "description": "",
       "fieldConfig": {
         "defaults": {
-          "custom": {},
           "decimals": 0,
           "mappings": [],
           "thresholds": {
@@ -62,12 +61,14 @@
           "fields": "",
           "values": false
         },
+        "text": {},
         "textMode": "value"
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "count(gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"True\",kind=~\"Kustomization|HelmRelease\"})\n-\nsum(gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"Deleted\",kind=~\"Kustomization|HelmRelease\"})",
+          "exemplar": true,
+          "expr": "count(gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"True\",kind=~\"Kustomization|HelmRelease\"})\n-\nsum(gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"Deleted\",kind=~\"Kustomization|HelmRelease\"})",
           "interval": "",
           "legendFormat": "",
           "refId": "A"
@@ -83,7 +84,6 @@
       "description": "",
       "fieldConfig": {
         "defaults": {
-          "custom": {},
           "decimals": 0,
           "mappings": [],
           "thresholds": {
@@ -118,12 +118,14 @@
           "fields": "",
           "values": false
         },
+        "text": {},
         "textMode": "value"
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "sum(gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"Kustomization|HelmRelease\"})",
+          "exemplar": true,
+          "expr": "sum(gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"Kustomization|HelmRelease\"})",
           "interval": "",
           "legendFormat": "",
           "refId": "A"
@@ -139,7 +141,6 @@
       "description": "",
       "fieldConfig": {
         "defaults": {
-          "custom": {},
           "decimals": 0,
           "mappings": [],
           "thresholds": {
@@ -178,12 +179,14 @@
           "fields": "",
           "values": false
         },
+        "text": {},
         "textMode": "value"
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "count(gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"True\",kind=~\"GitRepository|HelmRepository|Bucket\"})\n-\nsum(gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"Deleted\",kind=~\"GitRepository|HelmRepository|Bucket\"})",
+          "exemplar": true,
+          "expr": "count(gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"True\",kind=~\"GitRepository|HelmRepository|Bucket\"})\n-\nsum(gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"Deleted\",kind=~\"GitRepository|HelmRepository|Bucket\"})",
           "interval": "",
           "legendFormat": "",
           "refId": "A"
@@ -199,7 +202,6 @@
       "description": "",
       "fieldConfig": {
         "defaults": {
-          "custom": {},
           "decimals": 0,
           "mappings": [],
           "thresholds": {
@@ -234,12 +236,14 @@
           "fields": "",
           "values": false
         },
+        "text": {},
         "textMode": "value"
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "sum(gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"GitRepository|HelmRepository|Bucket\"})",
+          "exemplar": true,
+          "expr": "sum(gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"GitRepository|HelmRepository|Bucket\"})",
           "interval": "",
           "legendFormat": "",
           "refId": "A"
@@ -255,7 +259,6 @@
       "description": "",
       "fieldConfig": {
         "defaults": {
-          "custom": {},
           "mappings": [],
           "thresholds": {
             "mode": "absolute",
@@ -295,12 +298,14 @@
           "fields": "",
           "values": false
         },
-        "showUnfilled": true
+        "showUnfilled": true,
+        "text": {}
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind)",
+          "exemplar": true,
+          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind)",
           "interval": "",
           "legendFormat": "{{kind}}",
           "refId": "A"
@@ -316,7 +321,6 @@
       "description": "",
       "fieldConfig": {
         "defaults": {
-          "custom": {},
           "mappings": [],
           "thresholds": {
             "mode": "absolute",
@@ -356,12 +360,14 @@
           "fields": "",
           "values": false
         },
-        "showUnfilled": true
+        "showUnfilled": true,
+        "text": {}
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind)",
+          "exemplar": true,
+          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind)",
           "interval": "",
           "legendFormat": "{{kind}}",
           "refId": "A"
@@ -456,10 +462,11 @@
       "options": {
         "showHeader": true
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"Kustomization|HelmRelease\"}",
+          "exemplar": true,
+          "expr": "gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"Kustomization|HelmRelease\"}",
           "format": "table",
           "instant": true,
           "interval": "",
@@ -478,17 +485,17 @@
               "Time": true,
               "__name__": true,
               "app": true,
+              "container": true,
+              "endpoint": true,
+              "exported_namespace": true,
               "instance": true,
               "job": true,
               "kubernetes_namespace": true,
               "kubernetes_pod_name": true,
+              "pod": true,
               "pod_template_hash": true,
               "status": true,
-              "type": true,
-              "pod": true,
-              "container": true,
-              "endpoint": true,
-              "exported_namespace": true
+              "type": true
             },
             "indexByName": {},
             "renameByName": {
@@ -572,10 +579,11 @@
       "options": {
         "showHeader": true
       },
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "targets": [
         {
-          "expr": "gotk_reconcile_condition{namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"GitRepository|HelmRepository|Bucket\"}",
+          "exemplar": true,
+          "expr": "gotk_reconcile_condition{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",type=\"Ready\",status=\"False\",kind=~\"GitRepository|HelmRepository|Bucket\"}",
           "format": "table",
           "instant": true,
           "interval": "",
@@ -594,24 +602,24 @@
               "Time": true,
               "__name__": true,
               "app": true,
+              "container": true,
+              "endpoint": true,
+              "exported_namespace": true,
               "instance": true,
               "job": true,
               "kubernetes_namespace": true,
               "kubernetes_pod_name": true,
-              "pod_template_hash": true,
               "pod": true,
+              "pod_template_hash": true,
               "status": true,
-              "type": true,
-              "container": true,
-              "endpoint": true,
-              "exported_namespace": true
+              "type": true
             },
             "indexByName": {},
             "renameByName": {
               "Value": "Status",
               "kind": "Kind",
-              "namespace": "Namespace",
-              "name": "Name"
+              "name": "Name",
+              "namespace": "Namespace"
             }
           }
         }
@@ -640,9 +648,7 @@
       "datasource": "${DS_PROMETHEUS}",
       "description": "",
       "fieldConfig": {
-        "defaults": {
-          "custom": {}
-        },
+        "defaults": {},
         "overrides": []
       },
       "fill": 1,
@@ -675,7 +681,7 @@
         "alertThreshold": true
       },
       "percentage": false,
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "pointradius": 2,
       "points": false,
       "renderer": "flot",
@@ -685,7 +691,8 @@
       "steppedLine": false,
       "targets": [
         {
-          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind, name)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind, name)",
+          "exemplar": true,
+          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind, name)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"Kustomization|HelmRelease\"}[5m])) by (kind, name)",
           "hide": false,
           "interval": "",
           "legendFormat": "{{kind}}/{{name}}",
@@ -741,9 +748,7 @@
       "datasource": "${DS_PROMETHEUS}",
       "description": "",
       "fieldConfig": {
-        "defaults": {
-          "custom": {}
-        },
+        "defaults": {},
         "overrides": []
       },
       "fill": 1,
@@ -776,7 +781,7 @@
         "alertThreshold": true
       },
       "percentage": false,
-      "pluginVersion": "7.2.1",
+      "pluginVersion": "7.5.5",
       "pointradius": 2,
       "points": false,
       "renderer": "flot",
@@ -786,7 +791,8 @@
       "steppedLine": false,
       "targets": [
         {
-          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind, name)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind, name)",
+          "exemplar": true,
+          "expr": "  sum(rate(gotk_reconcile_duration_seconds_sum{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind, name)\n/\n  sum(rate(gotk_reconcile_duration_seconds_count{namespace=~\"$operator_namespace\",exported_namespace=~\"$namespace\",kind=~\"GitRepository|HelmRepository|Bucket\"}[5m])) by (kind, name)",
           "hide": false,
           "interval": "",
           "legendFormat": "{{kind}}/{{name}}",
@@ -835,8 +841,8 @@
       }
     }
   ],
-  "refresh": "10s",
-  "schemaVersion": 26,
+  "refresh": "",
+  "schemaVersion": 27,
   "style": "light",
   "tags": [
     "flux"
@@ -846,9 +852,11 @@
       {
         "current": {
           "selected": false,
-          "text": "prometheus",
-          "value": "prometheus"
+          "text": "Prometheus",
+          "value": "Prometheus"
         },
+        "description": null,
+        "error": null,
         "hide": 2,
         "includeAll": false,
         "label": null,
@@ -862,23 +870,32 @@
         "type": "datasource"
       },
       {
-        "allValue": ".*",
+        "allValue": "",
         "current": {
-          "selected": false,
-          "text": "All",
-          "value": "$__all"
+          "selected": true,
+          "text": [
+            "All"
+          ],
+          "value": [
+            "$__all"
+          ]
         },
         "datasource": "$DS_PROMETHEUS",
-        "definition": "gotk_reconcile_condition",
+        "definition": "label_values(gotk_reconcile_condition, namespace)",
+        "description": null,
+        "error": null,
         "hide": 0,
         "includeAll": true,
         "label": null,
-        "multi": false,
-        "name": "namespace",
+        "multi": true,
+        "name": "operator_namespace",
         "options": [],
-        "query": "gotk_reconcile_condition",
+        "query": {
+          "query": "label_values(gotk_reconcile_condition, namespace)",
+          "refId": "StandardVariableQuery"
+        },
         "refresh": 2,
-        "regex": "/.*namespace=\"([^\"]*).*/",
+        "regex": "",
         "skipUrlSync": false,
         "sort": 5,
         "tagValuesQuery": "",
@@ -886,6 +903,42 @@
         "tagsQuery": "",
         "type": "query",
         "useTags": false
+      },
+      {
+        "allValue": null,
+        "current": {
+          "selected": true,
+          "tags": [],
+          "text": [
+            "All"
+          ],
+          "value": [
+            "$__all"
+          ]
+        },
+        "datasource": null,
+        "definition": "label_values(gotk_reconcile_condition, exported_namespace)",
+        "description": null,
+        "error": null,
+        "hide": 0,
+        "includeAll": true,
+        "label": null,
+        "multi": true,
+        "name": "namespace",
+        "options": [],
+        "query": {
+          "query": "label_values(gotk_reconcile_condition, exported_namespace)",
+          "refId": "StandardVariableQuery"
+        },
+        "refresh": 2,
+        "regex": "",
+        "skipUrlSync": false,
+        "sort": 0,
+        "tagValuesQuery": "",
+        "tags": [],
+        "tagsQuery": "",
+        "type": "query",
+        "useTags": false
       }
     ]
   },

manifests/rbac/controller.yaml

@@ -21,6 +21,7 @@ rules:
 - apiGroups:
   - ""
   resources:
+  - namespaces
   - secrets
   verbs:
   - get

pkg/log/log.go

@@ -13,6 +13,7 @@ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 See the License for the specific language governing permissions and
 limitations under the License.
 */
+
 package log
 
 type Logger interface {

pkg/manifestgen/install/install.go

@@ -84,7 +84,7 @@ func Generate(options Options, manifestsBase string) (*manifestgen.Manifest, err
 
 	return &manifestgen.Manifest{
 		Path:    path.Join(options.TargetPath, options.Namespace, options.ManifestFile),
-		Content: string(content),
+		Content: fmt.Sprintf("%s\n%s", GetGenWarning(options), string(content)),
 	}, nil
 }
 
@@ -142,3 +142,11 @@ func ExistingVersion(version string) (bool, error) {
 		return false, fmt.Errorf("GitHub API returned an unexpected status code (%d)", res.StatusCode)
 	}
 }
+
+// GetGenWarning generates a consistent generation warning in the install and bootstrap case in the following format:
+// # This manifest was generated by flux. DO NOT EDIT.
+// # Flux version: v0.21.1
+// # Components: source-controller,kustomize-controller,helm-controller,notification-controller,image-reflector-controller,image-automation-controller
+func GetGenWarning(options Options) string {
+	return fmt.Sprintf("---\n%s\n# Flux Version: %s\n# Components: %s", manifestgen.GenWarning, options.Version, strings.Join(options.Components, ","))
+}

pkg/manifestgen/install/install_test.go

@@ -41,5 +41,10 @@ func TestGenerate(t *testing.T) {
 		t.Errorf("toleration key '%s' not found", opts.TolerationKeys[0])
 	}
 
+	warning := GetGenWarning(opts)
+	if !strings.HasPrefix(output.Content, warning) {
+		t.Errorf("Generation warning '%s' not found", warning)
+	}
+
 	fmt.Println(output)
 }

pkg/manifestgen/install/manifests.go

@@ -65,7 +65,15 @@ func fetch(ctx context.Context, url, version, dir string) error {
 
 func generate(base string, options Options) error {
 	if containsItemString(options.Components, options.NotificationController) {
-		options.EventsAddr = fmt.Sprintf("http://%s/", options.NotificationController)
+		// We need to use full domain name here, as some users may deploy flux
+		// in environments that use http proxy.
+		//
+		// In such environments they normally add `.cluster.local` and `.local`
+		// suffixes to `no_proxy` variable in order to prevent cluster-local
+		// traffic from going through http proxy. Without fully specified
+		// domain they need to mention `notifications-controller` explicity in
+		// `no_proxy` variable after debugging http proxy logs.
+		options.EventsAddr = fmt.Sprintf("http://%s.%s.svc.%s/", options.NotificationController, options.Namespace, options.ClusterDomain)
 	}
 
 	if err := execTemplate(options, namespaceTmpl, path.Join(base, "namespace.yaml")); err != nil {

pkg/manifestgen/labels.go

@@ -0,0 +1,26 @@
+/*
+Copyright 2021 The Flux authors
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+    http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+*/
+
+package manifestgen
+
+// These labels can be used to track down the namespace, custom resource definitions, deployments,
+// services, network policies, service accounts, cluster roles and cluster role bindings belonging to Flux.
+const (
+	PartOfLabelKey   = "app.kubernetes.io/part-of"
+	PartOfLabelValue = "flux"
+	InstanceLabelKey = "app.kubernetes.io/instance"
+	VersionLabelKey  = "app.kubernetes.io/version"
+)